Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4878g00004 ATGCAATGCAAACACTGTGTAGGTGCTGGAGTAAGGTTTCTTCCAATTTTTGAACGGGCACAGTCACAATCTTATTCCCCTCAGTCTTCTTCAACTAAGGCAAAATTTAGCAAAACGATGGGAGTGTTCGTAGGGACACAAACTGAGAGAGAAGAGAAGGTGTCTTTGGAGCTCAGCGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACTATAATGGTAGAATTAGTTCCTTGGACTTTCACAGGGCATCCAGTTATCTGGTGACTGCTAGTGATGATGAATCCATTCGACTGTATGAGGTTACCAGTGGAACTTGTTTGAAGACAATTAATAGCAAAAAGTATGGGGTTGATCTCGTTTGCTTCACATCTCATCCTACAACAGTCATATACTCTTCAAAAAATGGTTGGGATGAATCTTTGCGGTATTTCAAAGGTCACCATGACAGGGTGGTGTCGCTAAGCTTGTGCTCTCGGAAGGACTGCTTTATATCTGGTTCTCTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAAAAATGCCAGGGACTGTTACGTGTAAAAGGAAGACCTGCTATATCATATGACGATCAAGGACTTGTCTTTGCAGTTGCCTTTGGAGGATTTGTAAGAATGTTTGATGCTCGCAAGTATGAAAAGGGTCCCTTTGAGATATTTTCCGTTGGGGGAGATACTTCTGATGCAAATGTTGTGAAATTTAGTAATGATGGGAGTCTCATTCTTTTAACAACAGCAGATGGGCATATTCACGTGCTTGACTCATTTCGCGGCACACTTTTATCCACATATAATGTCACGCCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCCGAGGGAATGTTTGTAATATCTGGTTCTGGGGATGGAAGCATCTATGCATGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACCGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTAATGTTTGCTACTGGATCATCTGAGTTGTCATTCTGGATTCCAGATTTGTCTAAGTTGGGATCCTATGTTGGAAGAAAGTAG 1098 0.4244 MQCKHCVGAGVRFLPIFERAQSQSYSPQSSSTKAKFSKTMGVFVGTQTEREEKVSLELSEEILQSMEVGMAFKDYNGRISSLDFHRASSYLVTASDDESIRLYEVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLRVKGRPAISYDDQGLVFAVAFGGFVRMFDARKYEKGPFEIFSVGGDTSDANVVKFSNDGSLILLTTADGHIHVLDSFRGTLLSTYNVTPVSCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWIPDLSKLGSYVGRK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4878g00004 365 FunFam protein ANTHESIS POMOTING FACTOR 1 isoform X1 62 352 - -
Vium4878g00004 365 Gene3D - 140 360 IPR015943 GO:0005515
Vium4878g00004 365 SMART WD40_4 65 104 IPR001680 GO:0005515
Vium4878g00004 365 SMART WD40_4 226 265 IPR001680 GO:0005515
Vium4878g00004 365 SMART WD40_4 141 180 IPR001680 GO:0005515
Vium4878g00004 365 SMART WD40_4 268 310 IPR001680 GO:0005515
Vium4878g00004 365 Gene3D - 63 139 IPR015943 GO:0005515
Vium4878g00004 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 180 - -
Vium4878g00004 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Vium4878g00004 365 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Vium4878g00004 365 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Vium4878g00004 365 PRINTS G protein beta WD-40 repeat signature 91 105 IPR020472 -
Vium4878g00004 365 PANTHER WD40 REPEAT PROTEIN SWD2 53 357 IPR037867 -
Vium4878g00004 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 108 - -
Vium4878g00004 365 Pfam WD domain, G-beta repeat 77 103 IPR001680 GO:0005515
Vium4878g00004 365 Pfam WD domain, G-beta repeat 145 180 IPR001680 GO:0005515
Vium4878g00004 365 Pfam WD domain, G-beta repeat 284 309 IPR001680 GO:0005515
Vium4878g00004 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 319 IPR001680 GO:0005515
Vium4878g00004 365 SUPERFAMILY WD40 repeat-like 71 351 IPR036322 GO:0005515
Vium4878g00004 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 180 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4878g00004 Vium-Chr4878 24578 28161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4878g00004 72 264 U-box Gene Family AT1G04510 23.301 1.63e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4878g00004 K14962 - gmx:100810444 616.69