Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium4878g00004 | ATGCAATGCAAACACTGTGTAGGTGCTGGAGTAAGGTTTCTTCCAATTTTTGAACGGGCACAGTCACAATCTTATTCCCCTCAGTCTTCTTCAACTAAGGCAAAATTTAGCAAAACGATGGGAGTGTTCGTAGGGACACAAACTGAGAGAGAAGAGAAGGTGTCTTTGGAGCTCAGCGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACTATAATGGTAGAATTAGTTCCTTGGACTTTCACAGGGCATCCAGTTATCTGGTGACTGCTAGTGATGATGAATCCATTCGACTGTATGAGGTTACCAGTGGAACTTGTTTGAAGACAATTAATAGCAAAAAGTATGGGGTTGATCTCGTTTGCTTCACATCTCATCCTACAACAGTCATATACTCTTCAAAAAATGGTTGGGATGAATCTTTGCGGTATTTCAAAGGTCACCATGACAGGGTGGTGTCGCTAAGCTTGTGCTCTCGGAAGGACTGCTTTATATCTGGTTCTCTAGATCGAACTGTTTTACTATGGGATCAAAGGGCTGAAAAATGCCAGGGACTGTTACGTGTAAAAGGAAGACCTGCTATATCATATGACGATCAAGGACTTGTCTTTGCAGTTGCCTTTGGAGGATTTGTAAGAATGTTTGATGCTCGCAAGTATGAAAAGGGTCCCTTTGAGATATTTTCCGTTGGGGGAGATACTTCTGATGCAAATGTTGTGAAATTTAGTAATGATGGGAGTCTCATTCTTTTAACAACAGCAGATGGGCATATTCACGTGCTTGACTCATTTCGCGGCACACTTTTATCCACATATAATGTCACGCCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCCGAGGGAATGTTTGTAATATCTGGTTCTGGGGATGGAAGCATCTATGCATGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACCGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTAATGTTTGCTACTGGATCATCTGAGTTGTCATTCTGGATTCCAGATTTGTCTAAGTTGGGATCCTATGTTGGAAGAAAGTAG | 1098 | 0.4244 | MQCKHCVGAGVRFLPIFERAQSQSYSPQSSSTKAKFSKTMGVFVGTQTEREEKVSLELSEEILQSMEVGMAFKDYNGRISSLDFHRASSYLVTASDDESIRLYEVTSGTCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLRVKGRPAISYDDQGLVFAVAFGGFVRMFDARKYEKGPFEIFSVGGDTSDANVVKFSNDGSLILLTTADGHIHVLDSFRGTLLSTYNVTPVSCNSTLEASFSPEGMFVISGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFATGSSELSFWIPDLSKLGSYVGRK | 365 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium4878g00004 | 365 | FunFam | protein ANTHESIS POMOTING FACTOR 1 isoform X1 | 62 | 352 | - | - | |
Vium4878g00004 | 365 | Gene3D | - | 140 | 360 | IPR015943 | GO:0005515 | |
Vium4878g00004 | 365 | SMART | WD40_4 | 65 | 104 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | SMART | WD40_4 | 226 | 265 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | SMART | WD40_4 | 141 | 180 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | SMART | WD40_4 | 268 | 310 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | Gene3D | - | 63 | 139 | IPR015943 | GO:0005515 | |
Vium4878g00004 | 365 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 148 | 180 | - | - | |
Vium4878g00004 | 365 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 72 | 113 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | PRINTS | G protein beta WD-40 repeat signature | 297 | 311 | IPR020472 | - | |
Vium4878g00004 | 365 | PRINTS | G protein beta WD-40 repeat signature | 167 | 181 | IPR020472 | - | |
Vium4878g00004 | 365 | PRINTS | G protein beta WD-40 repeat signature | 91 | 105 | IPR020472 | - | |
Vium4878g00004 | 365 | PANTHER | WD40 REPEAT PROTEIN SWD2 | 53 | 357 | IPR037867 | - | |
Vium4878g00004 | 365 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 72 | 108 | - | - | |
Vium4878g00004 | 365 | Pfam | WD domain, G-beta repeat | 77 | 103 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | Pfam | WD domain, G-beta repeat | 145 | 180 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | Pfam | WD domain, G-beta repeat | 284 | 309 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 289 | 319 | IPR001680 | GO:0005515 | |
Vium4878g00004 | 365 | SUPERFAMILY | WD40 repeat-like | 71 | 351 | IPR036322 | GO:0005515 | |
Vium4878g00004 | 365 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 148 | 180 | IPR001680 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium4878g00004 | Vium-Chr4878 | 24578 | 28161 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium4878g00004 | 72 | 264 | U-box Gene Family | AT1G04510 | 23.301 | 1.63e-08 | 54.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium4878g00004 | K14962 | - | gmx:100810444 | 616.69 |