Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4877g00006 ATGTTTCTGATTCAGGATCTCTTCTCCCTCCCGCGCCTCCACCACGTCATCTCAGCAGAATCGGTTTTGCAGTCTCTAGGCGAGTCGGTTACGAGTTCCAGTTGCAAAAGCTCGGAGGTGGAGCAATGTCGCGACGAGTCAGCGGCGTTGGTGTTGAAATTCGTGGCGATGGCGTCGATTTTGTTGGCCGGATTTGGAGGGGTCGCGATTCCGCTGGCGGGGAAGTCGCGGCGGTTGCTTCGGCCGGATGGGGATGTCTTCGCGGCGGCGAGGGCGTTCGCGGCGGGGGTGATTCTGGCCACGGGGTTTGTGCACATGCTAAGGGATTCGTGGGAGGCGCTAGGAGACCCGTGTCTGAGAACGTACTGGAGCGCGTGGGCGAAGTTTCCATTCACCGGTTTCTTCGCCATGGTTTCCGCGCTCTGCACTCTCCTCGTTGACTTTATGGCGACTGCGTACTATGAGCGGAAGGATCGGCGTGGGCGCGTGGAGTGTGTGAAGGTTGTTGAGTGTGGGAGTTACGAGGAGGCGCTGTTGGAAACGGGAATAGTGGAGGTTAAGGATGTTGGAGGAGAGGGAAGTCACGCGGTGCAGCGAACACACTCCCACTCGCATCACCGTGATGATGTGGAAAGTACGGTTCGGCACGTCGTGGTCTCACAGGTATTGGAGCTTGGGATTGTATCTCATTCGATGATAATTGGGCTATCTCTGGGAGTTTCGCAAAGCCCTTGTACCATGAAACCCCTAATTGTTGCATTATCGTTCCATCAGTTCTTCGAAGGATTTGCACTTGGTGGATGCATCGCCCAAGCCCAATTCAAGACCTTGTCAGCAACAATTATGTCATGTTTTTTTGCACTAACAACGCCCCTAGGTGTTGCCATTGGGGCTAGTATTGCTTCAGTTTTTAACCCTTACAGTCCAGGAGCACTCATCACTGAAGGCATCTTGGACTCTTTCTCAGCTGGGATTTTAATGTACATGGCTTTAGTGGACTTAATAGCCGCAGATTTTCTTAGCAAGAAGATGCATTGCAACTTTAGGCTTCAGATTACATGTTACTGCTTGCTTTTCCTTGGAGCTGGCTTGATGTCTTCCATCGCAATTTGGGCATGA 1119 0.5255 MFLIQDLFSLPRLHHVISAESVLQSLGESVTSSSCKSSEVEQCRDESAALVLKFVAMASILLAGFGGVAIPLAGKSRRLLRPDGDVFAAARAFAAGVILATGFVHMLRDSWEALGDPCLRTYWSAWAKFPFTGFFAMVSALCTLLVDFMATAYYERKDRRGRVECVKVVECGSYEEALLETGIVEVKDVGGEGSHAVQRTHSHSHHRDDVESTVRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMKPLIVALSFHQFFEGFALGGCIAQAQFKTLSATIMSCFFALTTPLGVAIGASIASVFNPYSPGALITEGILDSFSAGILMYMALVDLIAADFLSKKMHCNFRLQITCYCLLFLGAGLMSSIAIWA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4877g00006 372 PANTHER ZINC/IRON TRANSPORTER 49 365 - -
Vium4877g00006 372 Pfam ZIP Zinc transporter 52 369 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vium4877g00006 372 NCBIfam ZIP zinc/iron transport family 35 372 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4877g00006 Vium-Chr4877 68022 72606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4877g00006 26 372 Inorganic Solute Cotransporters AT1G10970 60.847 5.64e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4877g00006 K14709 - gmx:100809426 567.77