Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4877g00004 ATGACTCCTTATTCCCTCCACCCACCACCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATACAAATTGGAGGCTTCACACAAAGTTATCAACAGGATGAGAAGATGGTAATATTGCATGATGGATCATCAAGCAATAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATTAGCAGCAGAAATGAGGGTAATTTAGGGTCGTACAGAATGGACGAAGAAGACATAAAACACAGTGATGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGCAACAGCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGGTTTGGTTACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACTACTACTACTACTGCTGCTTCTGCAGGCTCATCTGAAGGGCTGAGAAAGATTGAATATTTCAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAGAAAGTTTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTAATGGAGTTATCCTGTGGTTTTGTCCACTGA 879 0.4323 MTPYSLHPPPPSLQPQTQIFISSNNQDCPTFFNIFDPRKTIQIGGFTQSYQQDEKMVILHDGSSSNNLNSPEPVTVDPISSRNEGNLGSYRMDEEDIKHSDGSGKWMSSKMRLMKKMMRRSMSPTSDRLNPQGQESRYSQRSPRNSSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNGLVTPINSVCAKTRVYNKEKKSRANHFAQFKNKYKSTTTTTAASAGSSEGLRKIEYFKDFAISLSSKNSSFQQKVFPRDEVAEAAMLLMELSCGFVH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4877g00004 292 Gene3D - 147 194 IPR013088 GO:0006355|GO:0008270
Vium4877g00004 292 ProSiteProfiles GATA-type zinc finger domain profile. 148 184 IPR000679 GO:0006355|GO:0043565
Vium4877g00004 292 MobiDBLite consensus disorder prediction 123 167 - -
Vium4877g00004 292 MobiDBLite consensus disorder prediction 62 106 - -
Vium4877g00004 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 188 - -
Vium4877g00004 292 CDD ZnF_GATA 153 190 IPR000679 GO:0006355|GO:0043565
Vium4877g00004 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 27 292 - -
Vium4877g00004 292 SMART GATA_3 148 199 IPR000679 GO:0006355|GO:0043565
Vium4877g00004 292 MobiDBLite consensus disorder prediction 119 171 - -
Vium4877g00004 292 Pfam GATA zinc finger 154 187 IPR000679 GO:0006355|GO:0043565
Vium4877g00004 292 MobiDBLite consensus disorder prediction 88 105 - -
Vium4877g00004 292 ProSitePatterns GATA-type zinc finger domain. 154 179 IPR000679 GO:0006355|GO:0043565
Vium4877g00004 292 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4877g00004 Vium-Chr4877 41542 43559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4877g00004 103 292 C2C2-Gata Transcription Factor Family AT4G26150 39.462 6.98e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium4877g00004 GATA 2.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4877g00004 - - vra:106764137 489.574