Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4876g00009 ATGACTCCAAGGGATCGCCGCATCTTATCATTCCCGGCGGTTCACCCTTGCGGCGACATATCTCCGCCCACACTTCTCGCCTCTCTAATCACTCTCTCCCAGTCCGTATGCAACTTTCAACCCGAATTGTTCCCTACTCAACGTCGCAACGCACGAGAAACGATACGCCAAATCGGTATACTCTTAGTTCTCCTTCAAGAAATTCGAGACCGCGGTTTATCAATCCCTCACTCCACCATCCTCTGCCTCGCAGAACTCCACTTCGCCTTGCAAAAAATCAACTTCTTGATGCAAGATTGCACACTCCAAGGCGCGCGCCTTTTAATGCTTTCCAAATCGCAACACGTCGCATCCCAGTTCCGCTGCCTCATTCTCGCCGTCGCCACCTCCCTCGACGTTTTGCCTCTTCAAGAGTTCGACGTGTGCGCTGAAGTCAGGGAATTGGCGGAGTTAGTAACGAGGCAAGCGCGGAAAGCCAAGTTCGAAGTGGACCCCAGCGACGCGCGAGCGTGCAAAACTCTCCACAATGTTCTTCGGCTGTTCGCGAGGGGAACGGAACCTGACCTCAGCTCCATGCAGGGAATCATCGACTACCTCCAAATTAGAACATGGATGGATTGCAATAAAGAGATTATTTTCCTAGAAGAAGAAATCAGCTTAGAGTGTCGCGATCGAGACGAGCGAGAGGTTCCGTTGCTCAGTAGCTTGGTAGGGTTCTTAAGTTACTGCAGAGGTGTCATTTTCGAAACTACGGAAGACATTAATCAATCTGAAGGAAGATGCAGTACCGAGATGACTCCGTTAACGTTAACATTATTAACGTCCGTTAATCCAGAAGATTTCCGCTGCCCGATTTCCCTCGAGTTGATGACGGATCCGGTGACGGTGTCAACGGGTCAAACCTACGACCGAGCCTCCATTCAGAAATGGCTCAAAGCTGGGAACACCACGTGTCCCAAAACAGGGGAGAAGCTAACCAACACAGAGTTGGTTCCGAACACAACTCTCAAGAGGCTCATCCAACAGTTCTGCTCCGACAACGGCATTTCACTCAACCGCCCATCTAACCGTAACCGCAACATCGTCGCAGGTAGTCCGGCGGCGGCGCACGCCGTGCAATTCTTGGCGTGGTTCCTAACGCGGAGGCTGGCGTTCGGAACGCATGAACAGCAGCAGAAGGCCGCTTACGAGATTCGCGTGCTTGCTAGAACCAGCATTTTCAATAGGTCTTGTTTGATTGAAGTGGGAGCAGTGCCTCCTCTACTAGAACTTTTAGCATCTGCGTCTAACGATAAACCCACTCAAGAGAACGCAATCTCCGCTCTATTGAAGCTCTCTAAACATCCGAATGGACCTAAAAATATCATAACCAGTGGGGGCCTAAACGTAATTCTCTCCGTGCTGAAGAACGGAGTTAGCCTCGAAATTCGTCAAGTAGCTGCTGCCATCATGTTTTATCTCTCTTCGGTGAAAGAGTACCGGAAAATAATAGGTGAGAACCCCGAGGTGATTCCGGCTTTAGTGGAGTTAGTTAAAGAAGGAACAACCTGCGGGAGAAAGAACGCCGTGGTTGCCATTTTCGGGTTGCTTTTGCTTCCTAGGAATCACCAAAGGGTGGTCGCGGCTGGAGCAGTTCCTGCGCTGCTTGACATTTTGGCTTCTTCAGATAAGGAGGAGCTTGTGACTGAAGCATTGGCGGTTCTTGCAGCGCTGGCTGAGAATGCTGACGGGGCGCGTGCGATATTGGAAGGTTCGGCGTTGGGGTTAATTACGGGAATGCTGCGATCTGTGACGTCAAACGTGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCGCTTTGCGTGAATATTGGGGCGGAGGTGGTGGCTGTTCTGGCGAAGGACCCTTCGGTGATGCCATCGCTTTATTCGCTTGTGACGGGTGGGAGTAGTCAGGGCGCAAAGAAAGCGCGGTTCCTGATTAAAGTTATACAGGACTTCCACGAGACTAGAACTTCTGGACTCAAGGGTTCCTCTCCTCCGCAGGAACGATCGCTTCACGTTTGGTGA 2049 0.5115 MTPRDRRILSFPAVHPCGDISPPTLLASLITLSQSVCNFQPELFPTQRRNARETIRQIGILLVLLQEIRDRGLSIPHSTILCLAELHFALQKINFLMQDCTLQGARLLMLSKSQHVASQFRCLILAVATSLDVLPLQEFDVCAEVRELAELVTRQARKAKFEVDPSDARACKTLHNVLRLFARGTEPDLSSMQGIIDYLQIRTWMDCNKEIIFLEEEISLECRDRDEREVPLLSSLVGFLSYCRGVIFETTEDINQSEGRCSTEMTPLTLTLLTSVNPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKAGNTTCPKTGEKLTNTELVPNTTLKRLIQQFCSDNGISLNRPSNRNRNIVAGSPAAAHAVQFLAWFLTRRLAFGTHEQQQKAAYEIRVLARTSIFNRSCLIEVGAVPPLLELLASASNDKPTQENAISALLKLSKHPNGPKNIITSGGLNVILSVLKNGVSLEIRQVAAAIMFYLSSVKEYRKIIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLLPRNHQRVVAAGAVPALLDILASSDKEELVTEALAVLAALAENADGARAILEGSALGLITGMLRSVTSNVGKEHSASILLSLCVNIGAEVVAVLAKDPSVMPSLYSLVTGGSSQGAKKARFLIKVIQDFHETRTSGLKGSSPPQERSLHVW 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4876g00009 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Vium4876g00009 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Vium4876g00009 682 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Vium4876g00009 682 Gene3D - 351 666 IPR011989 -
Vium4876g00009 682 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Vium4876g00009 682 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Vium4876g00009 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 350 IPR013083 -
Vium4876g00009 682 SUPERFAMILY ARM repeat 381 655 IPR016024 -
Vium4876g00009 682 SMART arm_5 448 489 IPR000225 GO:0005515
Vium4876g00009 682 SMART arm_5 532 573 IPR000225 GO:0005515
Vium4876g00009 682 SMART arm_5 404 447 IPR000225 GO:0005515
Vium4876g00009 682 CDD RING-Ubox_PUB 278 330 IPR045210 -
Vium4876g00009 682 PANTHER U BOX DOMAIN-CONTAINING 76 655 - -
Vium4876g00009 682 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Vium4876g00009 682 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Vium4876g00009 682 FunFam RING-type E3 ubiquitin transferase 353 668 - -
Vium4876g00009 682 SUPERFAMILY RING/U-box 277 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4876g00009 Vium-Chr4876 57487 60001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4876g00009 2 682 U-box Gene Family AT1G60190 41.583 6.88e-171 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4876g00009 - - gmx:100787869 1039.64