Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4876g00008 ATGGCTGCTCGCAGACTTTCCTGGTTACTCTCTCGGTCTCTCTCTTCTTCTTCCCATTCTTCCGGAGCTTCTTTGTTTCACTCATTAGGAAGAAACTCCGGAGGGTGGAGAAACATCAATAGATTTAGCACGTCTGCAGCAGTTGAGGACCTAATCACTCCACAAGTTCCAATACGTTATACACAGCACCTGATAAATGGACGATTTGTGGATGCTGCATCAGGGAAAACATTTCCAGCTTATGACCCGCGAACGGGAGAAGTGATTGCTAATGTTGCTGAAGGGGATGCTGAAGACATCAACCGTGCAGTATCAGCAGCTCGCAAGGCCTTTGATGAAGGGCCTTGGCCTAAAATGAGTGCATATGAAAGAAGTCGAATATTGCTTCGCTTTGCTGATTTGGTTGAGAAACACAACGATGAGCTAGCTGCTCTGGAGACATGGAACAATGGAAAGCCTTATGAACAGGCTGCCAAGTCAGAAGTTCCATTGTTTGTGCGTTTATTTCACTATTATGCTGGTTGGGCGGATAAAATTCACGGGTTGACCGTCCCAGCTGATGGAGATTATCATGTTCAGACATTGCACGAACCGGTTGGTGTAGCAGGACAAATTATACCTTGGAACTTTCCTTTAATTATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCATGTGGTAATACCATTGTCCTGAAGACCGCTGAGCAAACACCACTAACAGCTCTCTTTGTTGCAAAACTATTTCATGAGGCTGGTCTTCCGGAAGGTGTTCTGAATGTAGTTTCTGGGTATGGTCCAACTGCTGGTGCAGCTCTTGCAAGTCATATGGACGTGGACAAGCTAGCATTTACTGGATCGACAGATACTGGAAAAGTTGTACTTGAATTGGCTGCAAGAAGCAATCTTAAGCCAGTGACATTGGAGCTTGGAGGGAAATCACCTTTCATAGTGTTCGACGATGCTGATGTTGACAAGGCTGTTGAACTTGCACACTTTGCTCTGTTCTTTAATCAGGGGCAATGTTGTTGTGCTGGGTCTCGTACTTTTGTACATGAGCGTGTCTATGATGAGTTCTTGGAGAAATCAAAGAAACGAGCTTTGAGACGTGTTGTTGGAGATCCATTCAAGAAAGGTGTTGAACAAGGTCCTCAGATTGATGGAGAACAATTTGAGAAAGTCCTTGGGTACATAAAGTCTGGGATTGAAAGCAATGCTACCCTTGAATGTGGGGGGGATAGATTGGGCTCGAAAGGATTCTTTATCCAGCCAACTGTCTTCTCAAATGTGCAGGATGACATGTTGATAGCACAAGACGAAATCTTTGGCCCAGTTCAGTCCATCTTGAAATTCAAGGACACTGATGAAGTAATTGAACGGGCAAATAGAACACGTTATGGTCTAGCGGCAGGCGTGTTTACTAAGAACGTGGACACGGCCAACAAATTGATGCGGGCACTAAGAGCTGGAACTGTGTGGATCAATTGCTTTGATGTTTTTGATGCTGCGATTCCTTTTGGTGGGTACAAGATGAGTGGTATTGGCAGGGAGAAAGGAATCTATAGTCTTCACAACTACCTCCAGGTGAAAGCTGTTGTCAACCGTTGA 1605 0.4492 MAARRLSWLLSRSLSSSSHSSGASLFHSLGRNSGGWRNINRFSTSAAVEDLITPQVPIRYTQHLINGRFVDAASGKTFPAYDPRTGEVIANVAEGDAEDINRAVSAARKAFDEGPWPKMSAYERSRILLRFADLVEKHNDELAALETWNNGKPYEQAAKSEVPLFVRLFHYYAGWADKIHGLTVPADGDYHVQTLHEPVGVAGQIIPWNFPLIMFAWKVGPALACGNTIVLKTAEQTPLTALFVAKLFHEAGLPEGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTDTGKVVLELAARSNLKPVTLELGGKSPFIVFDDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFLEKSKKRALRRVVGDPFKKGVEQGPQIDGEQFEKVLGYIKSGIESNATLECGGDRLGSKGFFIQPTVFSNVQDDMLIAQDEIFGPVQSILKFKDTDEVIERANRTRYGLAAGVFTKNVDTANKLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYLQVKAVVNR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4876g00008 534 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Vium4876g00008 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Vium4876g00008 534 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Vium4876g00008 534 FunFam Aldehyde dehydrogenase, putative 503 529 - -
Vium4876g00008 534 Pfam Aldehyde dehydrogenase family 69 531 IPR015590 GO:0016491
Vium4876g00008 534 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 46 531 - -
Vium4876g00008 534 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 65 338 - -
Vium4876g00008 534 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 529 IPR016162 GO:0016491
Vium4876g00008 534 SUPERFAMILY ALDH-like 55 533 IPR016161 GO:0016491
Vium4876g00008 534 CDD ALDH_F2BC 58 532 - -
Vium4876g00008 534 FunFam Mitochondrial aldehyde dehydrogenase 2 313 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4876g00008 Vium-Chr4876 46674 50791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4876g00008 1 533 Aldehyde Dehydrogenase Gene Family AT3G48000 80.712 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4876g00008 K00128 - qsa:O6P43_030889 934.095