Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4875g00004 AATGTCAGCTTCTCTAACTCAGTTGCATTATGCCTCACACTTAGAAATGTCACTACTTGGGGTTGGTGTCTCGTGGTTGAATTTAACAGTGGGGGTATAATTATATTAAATCTTGGGTTTCTTATTCCATTCAATCACAAACAATTCTTGAATGGAGTTATAATTTCTTATTTAATCCGTCAATCCTTTTCTTCAGGAAATAGTAACACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTAATGGCGAAGAAGGAAACCTCAGGATCATTTCTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAACTTAAAAGGTTTTCGCTACGTGAGCTGCAAGTTGCCACTGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTGGCAGTGAAAAGGCTTAAAGAGGAACGTACGCAGGGTGGGGAGCTCCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTCTGTATGACACCTACTGAACGATTGCTTGTGTATCCTTTCATGGCTAATGGAAGTGTAGCATCATGTTTACGAGAACGTCAAGAGGCTCAACCACCACTTGGTTGGCCAGAACGGAAGCGTATTGCTCTGGGTTCTGCGAGGGGGCTTGCTTATTTACATGATCATTGTGACCCTAAGATTATTCATCGTGATGTCAAAGCAGCAAATATTTTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTCTAGCAAAACTTATGGATTATAAAGATACTCACGTTACTACTGCTGTACGTGGAACAATTGGACATATAGCGCCTGAGTATCTTTCAACTGGAAAGTCTTCAGAGAAAACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTCATAACTGGACAAAGGGCTTTAGATCTAGCTCGACTTGCCAATGATGACGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGCAATTATATTGATGAGGAGGTAGAGCAATTAATCCAAGTGGCACTGCTATGCACACAGGGCTCTCCTATGGAAAGACCAAAGATGTCTGAAGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACCTTCCGGCAAGACTTCAACAACAACATTCATCACCCTAATGCAGCAAATTGGATAGTAGATTCAACTTCCCACATCCAACCAGATGAACTGTCAGGTCCTAGATGA 1383 0.4244 NVSFSNSVALCLTLRNVTTWGWCLVVEFNSGGIIILNLGFLIPFNHKQFLNGVIISYLIRQSFSSGNSNTGAIAGGVAAGAALLFAAPAIALAXWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMANGSVASCLRERQEAQPPLGWPERKRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRALDLARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNAANWIVDSTSHIQPDELSGPR 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4875g00004 460 FunFam Somatic embryogenesis receptor kinase 1 104 211 - -
Vium4875g00004 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium4875g00004 460 SMART serkin_6 135 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4875g00004 460 SUPERFAMILY Protein kinase-like (PK-like) 114 410 IPR011009 -
Vium4875g00004 460 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4875g00004 460 Pfam Protein kinase domain 136 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4875g00004 460 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Vium4875g00004 460 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 99 420 - -
Vium4875g00004 460 FunFam Somatic embryogenesis receptor-like kinase 1 212 429 - -
Vium4875g00004 460 Gene3D Phosphorylase Kinase; domain 1 104 211 - -
Vium4875g00004 460 Gene3D Transferase(Phosphotransferase) domain 1 212 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4875g00004 Vium-Chr4875 38440 41110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4875g00004 83 460 Receptor kinase-like Gene Family AT4G33430 89.974 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium4875g00004 Pkinase 2.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4875g00004 K13416 - gmx:100800522 739.954