Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium4874g00037 | ATGGGCAATGTGAATGGGAGAGACGATGTCAACGGTACTCCCTCCGAGACCGAAGGAGAAGAAGAAGACGACGACGAAGCTGCCGCTGTTGCACCTGCTCACGGTGTCGCCGATTGCATGTCCGCCAACCCTGGCTATCGTGCGCCTTCCGATATGATGGGTCATTCTCCCCCTGCTAGCCCTAGAACCACCCAATCTCCCTTCATGTTCGCCCCACAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCATACTCCAAGCCCTTCCTGGATGCAGACTACGTCAGGGTACGAGGATATGTACAGTGAACTTGGAATTCCAACGATGATTACTTGGAGTTATGATGGGAAAGAAGTGGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGTCCTTACAGAGATCAGGGAAGGATTTCACAATAATGAAAGTGTTGCCATCCGGTGTATACCAATTTCGATTTATTGTGGATGGCCAGTGGAGGTATGCACCTGACTTGCCTTGGGCTCAAGATGATGCGGGTAATGCTTACAACATTTTGGACTTGCAGGATTATGTTCCTGAGGACATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGACTCTAGTTATAACAACTTACAACTTAGTTCCGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATATTTGCAAATGACGCTTCTTAACATTCCGTCAACAAATATGGAAATCCAACCTCTTACAGCCAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGGGTAGCCCTTCAGTGGTCGCACTTGGCACAACTCATCGGTTTCTAGCCAAATATGTGACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA | 888 | 0.4707 | MGNVNGRDDVNGTPSETEGEEEDDDEAAAVAPAHGVADCMSANPGYRAPSDMMGHSPPASPRTTQSPFMFAPQVPVVPLQRPDEMHTPSPSWMQTTSGYEDMYSELGIPTMITWSYDGKEVAVEGSWDNWKTRMSLQRSGKDFTIMKVLPSGVYQFRFIVDGQWRYAPDLPWAQDDAGNAYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLQLSSEDYAKEPPLVPPYLQMTLLNIPSTNMEIQPLTARPQHVVLNHLYMQKGKGSPSVVALGTTHRFLAKYVTVVLYKSLQR | 295 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium4874g00037 | 295 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
| Vium4874g00037 | 295 | Gene3D | - | 196 | 293 | - | - | |
| Vium4874g00037 | 295 | SUPERFAMILY | AMPKBI-like | 190 | 292 | IPR037256 | - | |
| Vium4874g00037 | 295 | Pfam | 5'-AMP-activated protein kinase beta subunit, interaction domain | 221 | 291 | IPR006828 | GO:0005515 | |
| Vium4874g00037 | 295 | PANTHER | SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 | 1 | 295 | IPR043554 | - | |
| Vium4874g00037 | 295 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 108 | 187 | IPR032640 | - | |
| Vium4874g00037 | 295 | Gene3D | Immunoglobulins | 103 | 190 | IPR013783 | - | |
| Vium4874g00037 | 295 | CDD | E_set_AMPKbeta_like_N | 109 | 185 | - | - | |
| Vium4874g00037 | 295 | SUPERFAMILY | E set domains | 108 | 193 | IPR014756 | - | |
| Vium4874g00037 | 295 | SMART | AMPKBI_2 | 203 | 293 | IPR006828 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium4874g00037 | Vium-Chr4874 | 247647 | 250567 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium4874g00037 | 107 | 188 | Protein tyrosine phosphatase (PTP) family | AT3G01510 | 31.818 | 3.73e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium4874g00037 | K07199 | - | gmx:100777497 | 546.969 |