Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00030 ATGACGTCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGTCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTCTGCGGCACCTGAAATGGTGAAGGAAGAGAAAGCATCGTCCGGGGCTATGATTACTCCTTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAACTTTGCCAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCGCAGTTGGGGATTTACAAGCGAGACTTCGTTTGCTACCGCTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTACCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCGTATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTGGAGCAGGAAAAGGGGATTCAAGGGGGGCAGCTGCCTTTTTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAAAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGCGTGCAAAGTTATGAAAGAAGCAGATGATGAGTTTGTGTATGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGCGACTCAGTTAATGCAAATGTTATGTTTGGCGATGTTGTTTATTTTGACACATCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTATGGTAGAACTATTTTTTATGGTTGTGTTTTGTTGCAGGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCGATTATAAGTGAATTTCCAGCAACTAAACATGTTGTCCCTCAATGGAATATTCTACCCAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATACAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATGCTGATTTACTATATACCGTTCGGGCATCCTGGGCACAAGCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCGACAATAACTTACTCAAAGTCTATAGATGCATTTTTGAAAGGGATTTTCTCTGCTCATACGTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGTATTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCGCGGAGTATTCTCACTCCTTTTGCTTTTAATGCCTTGCAGCAAGAGCTGTTGCTAGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACATTGTTCTTGCAAGGAATTTGAATCCTCTGGGATACTATGCAGGCATGCTCTTCGTGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAGTACTTTTTAGGTAGATGGAGGCGGGAATGCTCATTACTTGTTGATGATGATAATAATAATCAAGGTGTTGGAGGGGAATGGTTTCAAGAATATCAGTCTCTGGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACGAAAGAACTTAATAGGATTCTTAACGAAGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACATGTCAGTTTCACCAGCCAACTAG 2076 0.4104 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSAAPEMVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADDEFVYDFTVDGNDKVENVAWSYGDSVNANVMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIISEFPATKHVVPQWNILPKVPCWFSPTLGSRYTEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDKHADLLYTVRASWAQAYVRGYFLARMATITYSKSIDAFLKGIFSAHTCLRSFFEQVGISASFQHQVFKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLLVDDDNNNQGVGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELNRILNEVRNLPEADGVCMNMSVSPAN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00030 691 SMART 26again6 573 600 IPR006564 GO:0008270
Vium4874g00030 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Vium4874g00030 691 Pfam MULE transposase domain 291 382 IPR018289 -
Vium4874g00030 691 Pfam SWIM zinc finger 569 594 IPR007527 GO:0008270
Vium4874g00030 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 665 IPR031052 GO:0006355
Vium4874g00030 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00030 Vium-Chr4874 187555 190411 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium4874g00030 MULE 1.1e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00030 - - gmx:100817107 1325.07