Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00029 ATGACGTCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGTCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTCTGCGGCACCTGAAATGGTGAAGGAAGAGAAAGCATCGTCCGGGGCTATGATTACTCCTTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAACTTTGCCAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCGCAGTTGGGGATTTACAAGCGAGACTTCGTTTGCTACCGCTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTACCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCGTATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTGGAGCAGGAAAAGGGGATTCAAGGGGGGCAGCTGCCTTTTTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAAAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGCGTGCAAAGTTATGAAAGAAGCAGATGATGAGTTTGTGTATGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGCGACTCAGTTAATGCAAATGTTATGTTTGGCGATGTTGTTTATTTTGACACATCTTATAGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTATGGTAGAACTATTTTTTATGGTTGTGTTTTGTTGCAGGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCGATTATAAGTGAATTTCCAGCAACTAAACATGTTGTCCCTCAATGGAATATTCTACCCAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATACAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATGCTGATTTACTATATACCGTTCGGGCATCCTGGGCACAAGCCTATGTTGGCATTTCTGCAAGTTTTCAACATCAAGTATTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCGCGGAGTATTCTCACTCCTTTTGCTTTTAATGCCTTGCAGCAAGAGCTGTTGCTAGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACATTGTTCTTGCAAGGAATTTGAATCCTCTGGGATACTATGCAGGCATGCTCTTCGTGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAGTACTTTTTAGGTAGATGGAGGCGGGAATGCTCATTACTTGTTGATGATGATAATAATAATCAAGGTGTTGGAGGGGAATGGTTTCAAGAATATCAGTCTCTGGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACGAAAGAACTTAATAGGATTCTTAACGAAGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACATGTCAGTTTCACCAGCCAACTAG 1962 0.4113 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSAAPEMVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADDEFVYDFTVDGNDKVENVAWSYGDSVNANVMFGDVVYFDTSYRSVTYGLLFGVWFGIDSYGRTIFYGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIISEFPATKHVVPQWNILPKVPCWFSPTLGSRYTEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDKHADLLYTVRASWAQAYVGISASFQHQVFKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLLVDDDNNNQGVGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELNRILNEVRNLPEADGVCMNMSVSPAN 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00029 653 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Vium4874g00029 653 Pfam SWIM zinc finger 531 556 IPR007527 GO:0008270
Vium4874g00029 653 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 627 IPR031052 GO:0006355
Vium4874g00029 653 SMART 26again6 535 562 IPR006564 GO:0008270
Vium4874g00029 653 ProSiteProfiles Zinc finger SWIM-type profile. 525 560 IPR007527 GO:0008270
Vium4874g00029 653 Pfam MULE transposase domain 291 382 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00029 Vium-Chr4874 187555 190411 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium4874g00029 MULE 1e-13 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00029 - - gmx:100817107 1236.09