Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00028 ATGACGTCCATACCTTCTAAAAACCTATGTGTTCGGAGGCAACAATGTCCTTGTGGAGATTGGAAGTGTTATATTACATATGAGGGTGATTCTGAAGAGGGTTCTGCGGCACCTGAAATGGTGAAGGAAGAGAAAGCATCGTCCGGGGCTATGATTACTCCTTATGTTGGAATGGTTTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAACTTTGCCAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGGTCTAGAATTAGCCCGCAGTTGGGGATTTACAAGCGAGACTTCGTTTGCTACCGCTCCGGCTTTGCCCCGGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCAGTGAGGTGTGGATGTGATGCAAAGATGTACCTATCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTTTGGAAGATGATCAAGTGCGTCTTTTGCCCGCGTATCGTAAAATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTCTCCAAGGCAGGGTTTCCAATTCATCGGATAGTGAAAATGCTGGAGCAGGAAAAGGGGATTCAAGGGGGGCAGCTGCCTTTTTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGTAAAAAGGTTGTTCTAGAGAATGAGGCATTGCTCAGTGAGAAAAGAGAAAATGATGTTTTGGAACTTCTTGAGGCGTGCAAAGTTATGAAAGAAGCAGATGATGAGTTTGTGTATGATTTTACTGTGGATGGGAATGATAAGGTTGAAAATGTAGCTTGGTCATATGGCGACTCAGTTAATGATGAAACACCTCAATCCTTCTCATGGGCATTACAGACTTTTGTCAGGTTCATGAGAGGAAGATGTCCACAAACTATTCTAACTGATCTAGACCCGGGACTTAGAGATGCGATTATAAGTGAATTTCCAGCAACTAAACATGTTGTCCCTCAATGGAATATTCTACCCAAGGTACCCTGTTGGTTTTCTCCTACTCTGGGTTCTCGGTATACAGAATTTAAATCTGAGTTCGATGCCTTATTTCACATTGAGAATACAGAGGAATTTGAACTTCAGTGGAGCCAGATGATTTCTGTGTTTGGACTTGGTTCAGATAAACATGCTGATTTACTATATACCGTTCGGGCATCCTGGGCACAAGCCTATGTAAGAGGTTACTTTCTGGCTCGAATGGCGACAATAACTTACTCAAAGTCTATAGATGCATTTTTGAAAGGGATTTTCTCTGCTCATACGTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGTATTTAAGGAGACTCAATATATTCAGCTCAAAACTTGCATACCGATTGAAGAGCATGCGCGGAGTATTCTCACTCCTTTTGCTTTTAATGCCTTGCAGCAAGAGCTGTTGCTAGCAATGCAATATGCTGCATCCGAAATGGCCAATGGATCATATATTGTGCGGCATTTCAAAAGGATGAACGGAGAACGGCTTGTAATATGGTTGGTTGAAGATGATCAGATACATTGTTCTTGCAAGGAATTTGAATCCTCTGGGATACTATGCAGGCATGCTCTTCGTGTATTTGTAATAAAGAACTACTTTCAGTTACCTGATAAGTACTTTTTAGGTAGATGGAGGCGGGAATGCTCATTACTTGTTGATGATGATAATAATAATCAAGGTGTTGGAGGGGAATGGTTTCAAGAATATCAGTCTCTGGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTGCGTAAAGAACTGACGAAAGAACTTAATAGGATTCTTAACGAAGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACATGTCAGTTTCACCAGCCAACTAG 1941 0.4152 MTSIPSKNLCVRRQQCPCGDWKCYITYEGDSEEGSAAPEMVKEEKASSGAMITPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLEQEKGIQGGQLPFLERDVRNFVQNRKKVVLENEALLSEKRENDVLELLEACKVMKEADDEFVYDFTVDGNDKVENVAWSYGDSVNDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIISEFPATKHVVPQWNILPKVPCWFSPTLGSRYTEFKSEFDALFHIENTEEFELQWSQMISVFGLGSDKHADLLYTVRASWAQAYVRGYFLARMATITYSKSIDAFLKGIFSAHTCLRSFFEQVGISASFQHQVFKETQYIQLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKRMNGERLVIWLVEDDQIHCSCKEFESSGILCRHALRVFVIKNYFQLPDKYFLGRWRRECSLLVDDDNNNQGVGGEWFQEYQSLAETLFQESSITKERSDYVRKELTKELNRILNEVRNLPEADGVCMNMSVSPAN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00028 646 ProSiteProfiles Zinc finger SWIM-type profile. 518 553 IPR007527 GO:0008270
Vium4874g00028 646 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 44 620 IPR031052 GO:0006355
Vium4874g00028 646 SMART 26again6 528 555 IPR006564 GO:0008270
Vium4874g00028 646 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Vium4874g00028 646 Pfam SWIM zinc finger 524 549 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00028 Vium-Chr4874 187555 190411 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium4874g00028 FAR1 1.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00028 - - gmx:100817107 1216.06