Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00025 ATGTCTGGTGGGGAGGTAGGTGGTGGGGATGTTTTTGTGGCCTGGGAGGAGCAGGTGATATGCCAGGAGCGTGGGAACCGAGTGATTCACTTCTATCTGAAGGATGCGACCGGAAATTCGGTGCTGGCGGTTGTGGGGACGGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCCTATGGATCCACACAGCCCATCAATGCCTGCAAGTGGAGGGCACGGCGAGAGGTTGTTGACTGGCTTACTTGTTTGGTCTCCAGGAATAGGTCACACCATCCAGGTGTACAATTGGATGAATTTGCACAAGTTGATGAATCTCTCAAAATTTTAGTGCCTGGAATTAATTTCAGTAATAAGATTTTACCTGATAAAATGATTTCTAGGAAACTAAAATTCCAAACCTCGGATATTGAATGGTCAGGCAGCACTTGGTTTTGTGCTAAACAGCTGAAGCACTACTCAGGGTTTTGCAGGAATGGAACAACCATAAATGTTCATTCATTTGTGTATATTATGGCTGAAGAAGAAAACCATTATCTTGGTTACTTGGAAGATATGTATGAAGACAAGAAGAGACAAAAAAAGGTGAAGGTGCGTTGGTTTCATCATGGTCAGGAAGTTAAGCAGGTGATTCCACAGCTGATTCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTCGGTGCTAAGATAGAGGTTCTTTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGCATGTCTCCGAGGCTGCTGAAGGTCCAGTATGATGATTTGCTTGATATAGACGGAGCACAGAAACTAGAGGAATGGGTTCCTGCATCTAGAGTGGCAGCTCGTGATAAATTGGGTATGCGATGTTTAGGCCGCTTAACAGTCCGGCCATGCCCTCCTGAATACAATTCAAGTCGTACTTTTGAGATTGGAGCAGCAGTGGATGCCTGGTCGTGTGATGGATGGTGGGAAGGGGTCATAACTGCAGTTAATGTCAGCGGAGATGGAATCCTGCAAGTTTACACCCCTGGTGAAGAGAGGTTCCTAAAGGTCGAGCAGAAGAACATTCGGATTTCCCGAGATTGGATCAATAACAGATGGATTGATATACGAGGAAAGCCTGACATTTGCACTTATTTAACTTCAAATGTCAGGTCCAGCATCGGGATGTCAGCTAATTCTGCAGTGGTGGATGGATCCATGTCTGATTGCTCTGCTTTAGAAAGTAAATCATCATCAATTCCCAAAGTTGAACTTGCTAAGAAGGTTGAACCAGAATCGTCTGGTTTGGAAATCCCTGTTGATCTGGAAAATATGAAGGGAATAACTCTGAGGGAGCCACTCTATGCCATTCATGAGGACAAGGATAACTCTGGTGGTGGCTGTGATGATGAAGCTGACAAGGCTGTGAAGACACTTCTGACCTTAAATGAACACAACGCTAATAACTCTTGTAGTGATGATGACACTGAGGATGATGATAATGTCAATGGTGATGATGTTGACAACGGGGAGGCCAGTGAGGAAAATTTTGATTGTTGTGAACCAAAACTTGATGCAGCAGAATCAATACAAGTTGCATAA 1617 0.4447 MSGGEVGGGDVFVAWEEQVICQERGNRVIHFYLKDATGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSTQPINACKWRARREVVDWLTCLVSRNRSHHPGVQLDEFAQVDESLKILVPGINFSNKILPDKMISRKLKFQTSDIEWSGSTWFCAKQLKHYSGFCRNGTTINVHSFVYIMAEEENHYLGYLEDMYEDKKRQKKVKVRWFHHGQEVKQVIPQLILQEGEVFITPHVQVGAKIEVLCQDSGIRGCWFRCKILSMSPRLLKVQYDDLLDIDGAQKLEEWVPASRVAARDKLGMRCLGRLTVRPCPPEYNSSRTFEIGAAVDAWSCDGWWEGVITAVNVSGDGILQVYTPGEERFLKVEQKNIRISRDWINNRWIDIRGKPDICTYLTSNVRSSIGMSANSAVVDGSMSDCSALESKSSSIPKVELAKKVEPESSGLEIPVDLENMKGITLREPLYAIHEDKDNSGGGCDDEADKAVKTLLTLNEHNANNSCSDDDTEDDDNVNGDDVDNGEASEENFDCCEPKLDAAESIQVA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00025 538 SMART agenet_At_2 317 375 IPR014002 -
Vium4874g00025 538 SMART agenet_At_2 231 296 IPR014002 -
Vium4874g00025 538 MobiDBLite consensus disorder prediction 489 538 - -
Vium4874g00025 538 ProSiteProfiles BAH domain profile. 167 280 IPR001025 GO:0003682
Vium4874g00025 538 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 233 409 - -
Vium4874g00025 538 MobiDBLite consensus disorder prediction 498 520 - -
Vium4874g00025 538 Gene3D - 134 244 IPR043151 -
Vium4874g00025 538 CDD Tudor_Agenet_AtDUF_rpt1_3 235 311 - -
Vium4874g00025 538 Pfam Agenet domain 236 311 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00025 Vium-Chr4874 159495 170015 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4874g00025 245 373 PHD Transcription Factor Family AT5G58610 27.820 6.65e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00025 - - vun:114188137 558.91