Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00024 ATGTCTGGTGGGGAGGTAGGTGGTGGGGATGTTTTTGTGGCCTGGGAGGAGCAGGTGATATGCCAGGAGCGTGGGAACCGAGTGATTCACTTCTATCTGAAGGATGCGACCGGAAATTCGGTGCTGGCGGTTGTGGGGACGGAGAGGAGTGTGAGGCACATGATGTATGTTGTCCCTGACCATTTCTTGCAGGCCTATGGATCCACACAGCCCATCAATGCCTGCAAGTGGAGGGCACGGCGAGAGGTTGTTGACTGGCTTACTTGTTTGGTCTCCAGGAATAGGTCACACCATCCAGGTGTACAATTGGATGAATTTGCACAAGTTGATGAATCTCTCAAAATTTTAGTGCCTGGAATTAATTTCAGTAATAAGATTTTACCTGATAAAATGATTTCTAGGAAACTAAAATTCCAAACCTCGGATATTGAATGGTCAGGCAGCACTTGGTTTTGTGCTAAACAGCTGAAGCACTACTCAGGGTTTTGCAGGAATGGAACAACCATAAATGTTCATTCATTTGTGTATATTATGGCTGAAGAAGAAAACCATTATCTTGGTTACTTGGAAGATATGTATGAAGACAAGAAGAGACAAAAAAAGGTGAAGGTGCGTTGGTTTCATCATGGTCAGGAAGTTAAGCAGGTGATTCCACAGCTGATTCTGCAAGAGGGAGAGGTTTTCATCACACCTCATGTTCAGGTGATCAGTGCTGAGTGTGTCAATGGTCCTGCGACTGTTTTGACTCCTAAGCATTATGAGAAATACCTGGCTGCTGTGCCTCATACATCTTTATCCGAGATCCATACGTGCTTTAGGCAGTTTAAAAACAATAGGCTTAAGCCCTTCACACTTACAAAGTTGCGTGGGTATAGTAGCCAGCCTGTTCTTTCTTGTTTAAATAGTCCTATTCTCTCCAAGAGAAAGGCAAAGTTTGAAAAGTCACACACAGATGATGATGAGAACTTCACTCAAGATGATCCTTTAAGGTCCAGCAATAAGAGGATTAGATGTTCTAAGGATCACATATTTGGGAAGGCTTTTTCTGGTCTGCAAGTCTCTGTTCCTACCAATGAAATGACAAAATGTGGACTGAAATATCCCAGTTTAAAATTAAAACTATCAAGAAAAACAGTAGGTATTAAGGTTATTGGACCAAAGCCTAAACTGCCTTTTCAGGTCGGTGCTAAGATAGAGGTTCTTTGTCAAGATAGTGGCATTAGAGGATGCTGGTTTAGATGTAAAATCTTGAGCATGTCTCCGAGGCTGCTGAAGGTCCAGTATGATGATTTGCTTGATATAGACGGAGCACAGAAACTAGAGGAATGGGTTCCTGCATCTAGAGTGGCAGCTCGTGATAAATTGGGTATGCGATGTTTAGGCCGCTTAACAGTCCGGCCATGCCCTCCTGAATACAATTCAAGTCGTACTTTTGAGATTGGAGCAGCAGTGGATGCCTGGTCGTGTGATGGATGGTGGGAAGGGGTCATAACTGCAGTTAATGTCAGCGGAGATGGAATCCTGCAAGTTTACACCCCTGGTGAAGAGAGGTTCCTAAAGGTCGAGCAGAAGAACATTCGGATTTCCCGAGATTGGATCAATAACAGATGGATTGATATACGAGGAAAGCCTGACATTTGCACTTATTTAACTTCAAATGTCAGGTCCAGCATCGGGATGTCAGCTAATTCTGCAGTGGTGGATGGATCCATGTCTGATTGCTCTGCTTTAGAAAGTAAATCATCATCAATTCCCAAAGTTGAACTTGCTAAGAAGGTTGAACCAGAATCGTCTGGTTTGGAAATCCCTGTTGATCTGGAAAATATGAAGGGAATAACTCTGAGGGAGCCACTCTATGCCATTCATGAGGACAAGGATAACTCTGGTGGTGGCTGTGATGATGAAGCTGACAAGGCTGTGAAGACACTTCTGACCTTAAATGAACACAACGCTAATAACTCTTGTAGTGATGATGACACTGAGGATGATGATAATGTCAATGGTGATGATGTTGACAACGGGGAGGCCAGTGAGGAAAATTTTGATTGTTGTGAACCAAAACTTGATGCAGCAGAATCAATACAAGTTGCATAA 2094 0.4331 MSGGEVGGGDVFVAWEEQVICQERGNRVIHFYLKDATGNSVLAVVGTERSVRHMMYVVPDHFLQAYGSTQPINACKWRARREVVDWLTCLVSRNRSHHPGVQLDEFAQVDESLKILVPGINFSNKILPDKMISRKLKFQTSDIEWSGSTWFCAKQLKHYSGFCRNGTTINVHSFVYIMAEEENHYLGYLEDMYEDKKRQKKVKVRWFHHGQEVKQVIPQLILQEGEVFITPHVQVISAECVNGPATVLTPKHYEKYLAAVPHTSLSEIHTCFRQFKNNRLKPFTLTKLRGYSSQPVLSCLNSPILSKRKAKFEKSHTDDDENFTQDDPLRSSNKRIRCSKDHIFGKAFSGLQVSVPTNEMTKCGLKYPSLKLKLSRKTVGIKVIGPKPKLPFQVGAKIEVLCQDSGIRGCWFRCKILSMSPRLLKVQYDDLLDIDGAQKLEEWVPASRVAARDKLGMRCLGRLTVRPCPPEYNSSRTFEIGAAVDAWSCDGWWEGVITAVNVSGDGILQVYTPGEERFLKVEQKNIRISRDWINNRWIDIRGKPDICTYLTSNVRSSIGMSANSAVVDGSMSDCSALESKSSSIPKVELAKKVEPESSGLEIPVDLENMKGITLREPLYAIHEDKDNSGGGCDDEADKAVKTLLTLNEHNANNSCSDDDTEDDDNVNGDDVDNGEASEENFDCCEPKLDAAESIQVA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00024 697 SMART BAH_4 167 286 IPR001025 GO:0003682
Vium4874g00024 697 Pfam BAH domain 168 261 IPR001025 GO:0003682
Vium4874g00024 697 MobiDBLite consensus disorder prediction 657 679 - -
Vium4874g00024 697 Pfam Agenet domain 395 470 IPR008395 -
Vium4874g00024 697 Gene3D - 134 281 IPR043151 -
Vium4874g00024 697 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 390 568 - -
Vium4874g00024 697 SMART agenet_At_2 476 534 IPR014002 -
Vium4874g00024 697 SMART agenet_At_2 390 455 IPR014002 -
Vium4874g00024 697 CDD Tudor_Agenet_AtDUF_rpt1_3 392 470 - -
Vium4874g00024 697 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682
Vium4874g00024 697 MobiDBLite consensus disorder prediction 648 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00024 Vium-Chr4874 159495 170020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4874g00024 404 532 PHD Transcription Factor Family AT5G58610 27.820 3.86e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00024 - - vun:114188137 1308.89