Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00016 ATGCATTTGATGAAGGGGAAATCAGAAAGAATGCAAACGTCCCAGAAACACCCAGCTTCATCCGGTTTCGATTTATACCACCAGCCTGTGCAAAACGTCGATCCCTACACTCGTTACCAAGTATTGCAAAGCAATTCTTGCCATGAAATCCATGATAGCAACAGTCAGGGAACCACTATCTCGTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCACTCAATGATCTCATAGGTAGTGATTCTCCTTCCTATGCCAGTGTATCGTCCAATTCCAACAGAAGTCCTTTTTCTCCGCATGCTTCTCATTCATACCATTCAGACCAGCATCAGTCATCTGACAACAACTATGGATCACCAACGAGTGCACACTCCAGTGCTGATGATAGCTATGAACTGAAGCACAAGCTCAGAGAACTTGAGATTTCACTGTTGGGGCCTGATTCAGAAATTGTTGACAGTTGTCACTGCTGCTACGAGGGTGGCCACCACGGAGCATCTCCAATGGCTAAATATAATTGGGATCAGGTTGTAGAAATGATTCCAAAACTAGACTTGAAAGAAGTCCTCAGTCGGTGTGCACAGGCTGTATCTGATGGTGATATTGAAACAGCGGTGGGATTTATGAATAATGTATTGCCAAAGATGGTATCAGTAGGGGGTGATCCAATCCAGAGGTTAGGGGCCTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATATACAAAGCCTTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATCTTGTACCAGATTTGTCCATATTGGAAGTTTTCTTATGTATCTGCCAATGCTGTCATTGGAGAAGCAATGCAAAATGAATCAAGAATCCACATAATTGACTTCCAAATAGCACAGGGCACTCAGTGGATGCTGCTTATTCATGCTCTTGCATCTCGTCCTGGTGGTACACCTTTCATTCGTGTAACTGGTGTCGATGATTCCGAATCCTTTCATGCAAGAGGAGGAGGACTTGACATTGTAGGAAAACGGCTCTCAGAATATGCCAAATCCTGTAGAGTTCCATTTGAGTTCCACAGTGCGGCAATGTCTGGATGCGAGGTTGAACTAGAAAACCTTGTGGTTCTACCGGGGGAAGCTCTGGCTGTGAATTTCCCTTTTGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCACAGGGACAGGCTATTAAGACGGGTTAAGAATTTGTCACCCAAGGTTGTGACACTGGTTGAGCAAGAATCCAACACCAACACTTCCCCCTTTTTCCAAAGGTTTGTTGAGACATTGAGTTATTACAGTGCAATGTTTGAGTCAATAGACGTGGCCCTGCCCAGAGAGGATAAGCAAAGGATCAGTGCTGATCAACACTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCACGAACTTTTGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTTCACCATGCCCTTTGAGTTCCTCAGTCACCAATGCAGTTAGAAATATGTTAAGAGAGTTCAATGGAAATTATAGGCTAGAACATATAGACGGTGCGCTCTATTTAGGATGGAAGAGAAGAGCCCTCTGTACATCTTCTGCCTGGAGATGTTACTGA 1692 0.4486 MHLMKGKSERMQTSQKHPASSGFDLYHQPVQNVDPYTRYQVLQSNSCHEIHDSNSQGTTISFEPCKEQYFTLESSPALNDLIGSDSPSYASVSSNSNRSPFSPHASHSYHSDQHQSSDNNYGSPTSAHSSADDSYELKHKLRELEISLLGPDSEIVDSCHCCYEGGHHGASPMAKYNWDQVVEMIPKLDLKEVLSRCAQAVSDGDIETAVGFMNNVLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMSYMHILYQICPYWKFSYVSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGVDDSESFHARGGGLDIVGKRLSEYAKSCRVPFEFHSAAMSGCEVELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRISADQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFSPCPLSSSVTNAVRNMLREFNGNYRLEHIDGALYLGWKRRALCTSSAWRCY 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00016 563 MobiDBLite consensus disorder prediction 86 131 - -
Vium4874g00016 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 120 555 IPR005202 -
Vium4874g00016 563 MobiDBLite consensus disorder prediction 13 27 - -
Vium4874g00016 563 Pfam GRAS domain family 191 561 IPR005202 -
Vium4874g00016 563 MobiDBLite consensus disorder prediction 1 27 - -
Vium4874g00016 563 MobiDBLite consensus disorder prediction 86 134 - -
Vium4874g00016 563 ProSiteProfiles GRAS family profile. 181 561 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00016 Vium-Chr4874 107271 110723 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4874g00016 11 561 GRAS Transcription Factor Family AT4G17230 58.303 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4874g00016 GRAS 4.6e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00016 - - gmx:100819190 956.822