Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00013 ATGCATTTGATGAAGGGGAAATCAGAAAGAATGCAAACGTCCCAGAAACACCCAGCTTCATCCGGTTTCGATTTATACCACCAGCCTGTGCAAAACGTCGATCCCTACACTCGTTACCAAGTATTGCAAAGCAATTCTTGCCATGAAATCCATGATAGCAACAGTCAGGGAACCACTATCTCGTTTGAACCCTGCAAGGAGCAATACTTTACCCTTGAATCATCCCCAGCACTCAATGATCTCATAGGTAGTGATTCTCCTTCCTATGCCAGTGTATCGTCCAATTCCAACAGAAGTCCTTTTTCTCCGCATGCTTCTCATTCATACCATTCAGACCAGCATCAGTCATCTGACAACAACTATGGATCACCAACGAGTGCACACTCCAGTGCTGATGATAGCTATGAACTGAAGCACAAGCTCAGAGAACTTGAGATTTCACTGTTGGGGCCTGATTCAGAAATTGTTGACAGTTGTCACTGCTGCTACGAGGGTGGCCACCACGGAGCATCTCCAATGGCTAAATATAATTGGGATCAGGTTGTAGAAATGATTCCAAAACTAGACTTGAAAGAAGTCCTCAGTCGGTGTGCACAGGCTGTATCTGATGGTGATATTGAAACAGCGGTGGGATTTATGAATAATGTATTGCCAAAGATGGTATCAGTAGGGGGTGATCCAATCCAGAGGTTAGGGGCCTACATGTTGGAGGGTCTAAGAGCAAGGTTGGAGTCTTCAGGGAGCCTAATATACAAAGCCTTGAAATGTGAACAACCAGCAAGCAAAGATCTCATGAGTTACATGCACATCTTGTACCAGATTTGTCCATATTGGAAGTTTTCTTATGTATCTGCCAATGCTGTCATTGGAGAAGCAATGCAAAATGAATCAAGAATCCACATAATTGACTTCCAAATAGCACAGGGCACTCAGTGGATGCTGCTTATTCATGCTCTTGCATCTCGTCCTGGTGGAACACCTTTCATTCGTGTAACTGGTGTCGATGATTCCGAATCCTTTCATGCAAGAGGAGGAGGACTTGACATTGTAGGAAAACGGCTCTCAGAATATGCCAAATCCTGTAGAGTTCCATTTGAGTTCCACAGTGCGGCAATGTCTGGATGCGAGGTTGAACTAGAAAACCTTGTGGTTCTACCGGGGGAAGCTCTGGCTGTGAATTTCCCTTTTGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACAGAGAACCACAGGGACAGGCTATTAAGACGGGTTAAGAATTTGTCACCCAAGGTTGTGACACTGGTTGAGCAAGAATCCAACACCAACACTTCCCCCTTTTTCCAAAGGTTTGTTGAGACATTGAGTTATTACAGTGCAATGTTTGAGTCAATAGACGTGGCCCTGCCCAGAGAGGATAAGCAAAGGATCAGTGCTGAACAACACTGTGTGGCTCGTGACATTGTTAACATGATAGCTTGTGAGGGGCCTGAGAGGGTGGAAAGGCACGAACTTTTGGGGAAGTGGAGGTCAAGATTTTCAATGGCTGGTTTTGCACCATGCCCTTTGAGTTCCTCAGTCACCAATGCAGTTAGAAATATGTTAAGAGAGTTCAATGGAAATTATAGGCTAGAACATATAGACGGTGCGCTCTATTTAGGATGGAAGAGAAGAGCCCTCTGTACATCTTCTGCCTGGAGATGTTACTGA 1692 0.4492 MHLMKGKSERMQTSQKHPASSGFDLYHQPVQNVDPYTRYQVLQSNSCHEIHDSNSQGTTISFEPCKEQYFTLESSPALNDLIGSDSPSYASVSSNSNRSPFSPHASHSYHSDQHQSSDNNYGSPTSAHSSADDSYELKHKLRELEISLLGPDSEIVDSCHCCYEGGHHGASPMAKYNWDQVVEMIPKLDLKEVLSRCAQAVSDGDIETAVGFMNNVLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPASKDLMSYMHILYQICPYWKFSYVSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGVDDSESFHARGGGLDIVGKRLSEYAKSCRVPFEFHSAAMSGCEVELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRISAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGNYRLEHIDGALYLGWKRRALCTSSAWRCY 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00013 563 MobiDBLite consensus disorder prediction 86 131 - -
Vium4874g00013 563 MobiDBLite consensus disorder prediction 13 27 - -
Vium4874g00013 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 120 555 IPR005202 -
Vium4874g00013 563 MobiDBLite consensus disorder prediction 1 27 - -
Vium4874g00013 563 MobiDBLite consensus disorder prediction 86 134 - -
Vium4874g00013 563 Pfam GRAS domain family 191 561 IPR005202 -
Vium4874g00013 563 ProSiteProfiles GRAS family profile. 181 561 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00013 Vium-Chr4874 99183 102835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4874g00013 11 561 GRAS Transcription Factor Family AT4G17230 58.484 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4874g00013 GRAS 1.1e-126 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00013 - - gmx:100819190 959.133