Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4874g00009 ATGGTTTCGCTGGAGGAATCACGGTCTAATTCGAGCCGTTTCCCCTTGGCCAGAAGTTATCAGTACCACTCTTCCGTTTCGTCCAAAACGCAGCGTCATATAGGAAGGTCCATGCGCACGATACGCTCCAATTTCTTCCAAGATGATGACAGCAGCTGCTCCTTCACCGAGAAATCCACCTGTCTATCGGAGAACCTCACTGACTCCGTCGTCGACCTCCGCCTCGGCGAGCTCGCGTCGCGGAACAACAAATCCTTGAAGTCCTCACCAGCAGAGGAGGACTTCCTCGACCTCTCTCAGGCCTTCAGTGATTTCTCCGCATGTAGCAGCGACATCTCCGGCGAGCTGCAGCGCCTTGCGACACTCCCATCACCGAAATGCGTACAGAAGAACAATATATCTGGAGAAGTGGAGCCGGAGCCGGAGCCGGAGCCCTGCACGGGTTTCCTGCAGAGGGAGAGCTTCTCTACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAGATTTGCATCGACGGCCTCCAGTCGCAGTCGGTGGCGGTAAAGCGCTCCGCGGCGGCGAAGCTCCGGCTGCTAGCGAAGAACCGCGCCGACAACCGGATTTTGATTGCGGAGTCCGGCGCGGTGCCTGTTCTTGTTCCTCTTCTCCGTTGTAGTGATCCTTGGACGCAGGAACATGCGGTAACCGCGCTGTTAAATCTATCTCTCCACGAGGACAATAAAATGCTGATAACCAATGCCGGAGCAGTGAAGTCGCTGATTTATGTGCTGAAAACGGGAACGGAAACTTCGAAGCAGAACGCGGCATGCGCGCTTCTGAGCCTGGCGTTGGTGGAAGAGAACAAAAGCTCCATCGGGGCTTCCGGAGCGATACCGCCCTTGGTTTCGCTTCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACCCTTTATAAGCTGTGTTCCGTGAGGCAGAACAAGGAGAGGGCAGTGAGCGCCGGTGCGGTGAAGCCGCTGGTGGAGATGGTGGCGGAGCAGGGGAGCGGCATGGCGGAAAAGGCCATGGTGGTGCTGAACAGCCTGGCAGGGATTCAGGAAGGGAAGGACGCAATTGTGGAAGAAGGTGGGATCGCTGCTCTTGTGGAAGCCATTGAGGATGGGTCTGTTAAGGGGAAGGAGTTCGCTGTTCTGACCCTTCTTCAGCTCTGTGTTGACAGTATCAGAAACAGAGGGTTTCTTGTCAGAGAGGGTGGGATTCCTCCTCTCGTTGCCCTTTCTCAAACTGGCAGTGTTCGAGCTAAGCACAAGGCAGAAACGCTGCTTCGATATTTGAGGGAATCAAGACAAGAGGCGTCTACTTCGAGCTCTTAG 1374 0.5568 MVSLEESRSNSSRFPLARSYQYHSSVSSKTQRHIGRSMRTIRSNFFQDDDSSCSFTEKSTCLSENLTDSVVDLRLGELASRNNKSLKSSPAEEDFLDLSQAFSDFSACSSDISGELQRLATLPSPKCVQKNNISGEVEPEPEPEPCTGFLQRESFSTEIIESISPEDLQPTVKICIDGLQSQSVAVKRSAAAKLRLLAKNRADNRILIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVEMVAEQGSGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSIRNRGFLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRESRQEASTSSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4874g00009 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Vium4874g00009 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Vium4874g00009 457 FunFam U-box domain-containing protein 4 311 452 - -
Vium4874g00009 457 FunFam U-box domain-containing protein 4 158 310 - -
Vium4874g00009 457 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Vium4874g00009 457 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Vium4874g00009 457 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Vium4874g00009 457 SUPERFAMILY ARM repeat 169 446 IPR016024 -
Vium4874g00009 457 PANTHER U BOX DOMAIN-CONTAINING 135 446 - -
Vium4874g00009 457 SMART arm_5 283 323 IPR000225 GO:0005515
Vium4874g00009 457 SMART arm_5 201 241 IPR000225 GO:0005515
Vium4874g00009 457 SMART arm_5 406 447 IPR000225 GO:0005515
Vium4874g00009 457 SMART arm_5 242 282 IPR000225 GO:0005515
Vium4874g00009 457 SMART arm_5 365 405 IPR000225 GO:0005515
Vium4874g00009 457 SMART arm_5 324 364 IPR000225 GO:0005515
Vium4874g00009 457 Gene3D - 156 456 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4874g00009 Vium-Chr4874 69405 72339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4874g00009 109 450 U-box Gene Family AT2G23140 44.729 5.58e-84 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4874g00009 - - gmx:100818658 773.081