Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4872g00002 ATGGAGACTCAGTTTTCAAATGGAAAAAAGGCAATGGAAGAAGAATTGATGAGAGGGCGTGACATGGCAAACCAGTTACTTGATGCACTTGGTCATGGTAAATTGAACACTCATCTTCAAGATGAGGGTACGTCCAAGTCAGTGTTACCATTTGTTGAAGATCTTGTGCGCAAGGTCTTGTGCTCATTCACAAATACTCTTTTGCTTTTGAACTCCAATGAAATCACACCGTCTCTCTCATCATCAACCAGTTTCCCTGAGATGGAGTCTCTGCATGAAACCTGCAAGAGTCGCAACATTCTCAACACTAATAACCGAAGAAGGTGCTACAAGAGAAAATCAATTGCGCCAACTTGGGAGAAGGACAGCTCCATACTGATTGAAGATGGCTATGCATGGAGAAAGTACGGACAAAAAATGACATTGCACGCAAAATACCTAAGGAGCTACTACAGGTGCACTTACAAGACTGATCAGAGATGCTCAGCAATGAAACAGGTGCAGAGGATTCAAGATGATCCTCCTTTGTACCGAACAACCTATTATGGGCATCACACTTGTCGAAGCCCTGTGAATCCCGAGATTATTATGGAACCTTTTTCTCCTTCTGCATCTTCCACGTTACTTAGCTTTGATAACAGCCTTCATAGCAAACAAGAAAACCCGTTTCCTTCACCACTGCTTGCATCAATCAAGCGGGAGCCTCAGAAAGTGATTCACGATGAACATGGTGCTCAAAACCAGTTGACTGCGTTAGAGAACCTCCTATTATACGATTGTGATATTTCTTTTGATTATTCGAGGAATGCCACTTTGCTGTCGTCGGCTGAATCCGTTCAATTTGAGAATGTTTTTGAACAGTTTGGATTTTGA 873 0.4238 METQFSNGKKAMEEELMRGRDMANQLLDALGHGKLNTHLQDEGTSKSVLPFVEDLVRKVLCSFTNTLLLLNSNEITPSLSSSTSFPEMESLHETCKSRNILNTNNRRRCYKRKSIAPTWEKDSSILIEDGYAWRKYGQKMTLHAKYLRSYYRCTYKTDQRCSAMKQVQRIQDDPPLYRTTYYGHHTCRSPVNPEIIMEPFSPSASSTLLSFDNSLHSKQENPFPSPLLASIKREPQKVIHDEHGAQNQLTALENLLLYDCDISFDYSRNATLLSSAESVQFENVFEQFGF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4872g00002 290 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 207 IPR044810 GO:0003700
Vium4872g00002 290 ProSiteProfiles WRKY domain profile. 122 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4872g00002 290 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4872g00002 290 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4872g00002 290 SUPERFAMILY WRKY DNA-binding domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4872g00002 290 Gene3D WRKY domain 111 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4872g00002 Vium-Chr4872 49423 50933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4872g00002 1 213 WRKY Transcription Factor Family AT3G56400 34.440 1.47e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4872g00002 WRKY 2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4872g00002 - - gmx:100792193 424.476