Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4872g00001 ATGGAGAATCAGGCTTCGAATGGAAGAAAAGCAATGGAAGAAGAGCTCAACAAAGGGCGTGACACAGCAAACCAGTTACTTGAAATACTTGTTCATAAATCCAACACTAGTCATACAGATGCAGAAGTAGAAGGGTTAGTGCTACCATCTGCTGAGGATCTTGCTCGCAAGGTACTCAGATCGTTCTCAAATACCCTTTTGCTGTTGAGCACTCAAAGTGATGTTTCCGATGCTCTTGTTATGCCTGTCACTGTCAATGATGTCTCTTCGTCCCTCATATGCCCTAATCTTGAGGATAAGGATGGGGTTTGCAAGAGTTCCATCAATGCTAAAAGACGAAGAATATCCCACAAAAGAAATGCACCAACATGGGAGAAGAACAGCTCACACCTGATTGAAGATGGCTATATATGGAGAAAGTATGGACAGAAAATGACCATCAATGCAAAATACCTCAGGACCTACTACAGATGCACTCACAAGTATGATCAGGGTTGTCCAGCAACCAAACAGGTTCAAAGGATTCAAGAGAACCCTCCATTGTACCGAACAACTTATTATGGTCATCACAATTGCAAAAGTCCAGAAATAATGTTGGAACCAGCTTCTTCTTCTGACTCTTGTATGTTCCTTAGCTTCAGTACCACCTTCCCGACCAAAGAAAAATACCAGTTTTTATCATCAGTTTTTTCATCCACGAAACAGGAGCCTATGGAAGTGATTCCGGATGACTGTGGTATACACAACCAATTACCCTCTTCAGATTACAATCTGTTAAGTGACTATGAACTTGATTTCAATTGTTTGAGGCATGACACTGTGCAGTCTATGCCATCCTCCACTGAATCTTTTCTATTTGATCAAGTTTATGGGAGCGATATGGATTTTGATGGCTAG 897 0.4136 MENQASNGRKAMEEELNKGRDTANQLLEILVHKSNTSHTDAEVEGLVLPSAEDLARKVLRSFSNTLLLLSTQSDVSDALVMPVTVNDVSSSLICPNLEDKDGVCKSSINAKRRRISHKRNAPTWEKNSSHLIEDGYIWRKYGQKMTINAKYLRTYYRCTHKYDQGCPATKQVQRIQENPPLYRTTYYGHHNCKSPEIMLEPASSSDSCMFLSFSTTFPTKEKYQFLSSVFSSTKQEPMEVIPDDCGIHNQLPSSDYNLLSDYELDFNCLRHDTVQSMPSSTESFLFDQVYGSDMDFDG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4872g00001 298 SUPERFAMILY WRKY DNA-binding domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4872g00001 298 Coils Coil 9 29 - -
Vium4872g00001 298 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 208 IPR044810 GO:0003700
Vium4872g00001 298 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4872g00001 298 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4872g00001 298 Gene3D WRKY domain 119 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4872g00001 298 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4872g00001 Vium-Chr4872 10260 12529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4872g00001 15 194 WRKY Transcription Factor Family AT3G56400 34.574 3.37e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4872g00001 WRKY 2.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4872g00001 - - gmx:102663141 394.815