Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4868g00002 TATTTTCTTTTAGATTTTGTACCAATTTGGATCCATAATCTGAGGATCTGGCTGGACCTGAACTATCTGCAGATTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATTAAAGGAAGTAAAATTCTAAGTCATGGTTGTCTAGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATTCCTCTATCTGAAGGGGATGCATGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTGCACTCTCTGCTTCCGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGCCCATGCGTCCAAGTAGCCCTAAGGTATGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGGCTAAGTCGTGTTAATTCCACACCATCAGATTGA 588 0.4286 YFLLDFVPIWIHNLRIWLDLNYLQIRIFALMDEPILDAICERLRQKTHIKGSKILSHGCLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFALSASDLEEVTILFTRFLRSPCVQVALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSTPSD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4868g00002 195 ProSiteProfiles cAMP/cGMP binding motif profile. 27 95 IPR000595 -
Vium4868g00002 195 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 24 187 - -
Vium4868g00002 195 Gene3D Jelly Rolls 25 149 IPR014710 -
Vium4868g00002 195 CDD CAP_ED 27 143 IPR000595 -
Vium4868g00002 195 SUPERFAMILY cAMP-binding domain-like 24 151 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4868g00002 Vium-Chr4868 6740 8053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4868g00002 24 105 Ion Channels AT3G17700 69.512 8.49e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4868g00002 K05391 - gmx:100781973 324.324