Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4868g00001 ATGGCTAGTTTTGAAAATGATGAGCTGCAGAAGATACCAGAAGAAACTGATGCACAACCATATCATGAAACTTTGCATTCTAAATTTCAAAGGCTTTTATCCGGGAAACAAAGTGCATCAGTTTCTATTCCCATGGAGTCATATGAGGTAGAAACTAGTCTCGTGGGAGATAGCGGTTCATTATATGCTACATCAGAAAGTGATAATCTTATGCAGCATAGTATAGTTGTAACAGGAAACATAGCACAGGAGAGCACAGATGAATTTTCTACTGTTGACAGCACGGCTTCAAAGTACTGGCATAAAAGCTATGATAGCATAAATGAACATTTACTGAGATCTGGGAAACTGGGAATTTGTAATGATCCTTATTGTACTACTTGTCCTTCTTACTTCAAGTCTTCTCGGCTAAGAAATCCAAAAGCTTGTAATATACCTGATCCGAAGTTTCAGAATGCTCTTAATGGGGATGCCAAAGTATTTGCAAGAAAATTTTGTTCTCTGTGTTCATCTTTTGTTCCTGGAGTTATGAATCCTCACTCTAAATTCATACAACAATGGAACAAGGTTCTTGCCAGTTTTTGCTTGGTTGCAATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGATCATAATTGTATAGTTATCAACTGGAAATTGACAAAAGCACTTGTTATAGTTAGAACCATGAATGACTTCATATATTTCCTTCACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCAAAACAAATTGCATTTCATTACCTTAAGGGTTATTTTCTTGTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATCATGTTATTGTCTGTACTACCAAAATCATTGAGGGGAGCAAATTATGCTAAGAATGTTCTGCGTGCAGCTATCCTAGTGCAGTATATTCCCAGATTATTCAGATTTCTGCCTATGCTGTTTGGTCAGTCTCCAGCAGGATTCATATTTGAGTCAGCATGGGCAAATTTCATTATAAATCTTCTCATTTTCATTCTAGCTAGCCATGTTGTTGGCTCTATCTGGTACCTATTTGCTCTACAGAGGGTTAATCAATGTTTTCGAAATGCGTGCCAAAGTTCTCATATCCCTGGATGCCTGGCATTCATTGATTGTGGACATAGCCATGTTGGGGACAATCGGCTTGGCTTATCATCAAACCAGTGGAACAACAATGCAGATGCTATTGCATGTTGGAATTCCTCTTCCAGCGGTTCTTTTTCTTATGGGATTTATAACAATGCTGTACCTCTTACTACACAAGCAGACATCGTCACCAAATACATATATGCTCTATTTTGGGGATTACAGCAAATCAGTACTCTGGCTGGTAACCAAACACCAAGCGACTTTGTGTTTGAAACCCTTTTTACTATAGCCATCATAGGATTGGGACTTTTTCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGAAATGCAACTTAGACGCGGTGATGTTGAGCAATGGATGAGTCATAG 1577 0.3843 MASFENDELQKIPEETDAQPYHETLHSKFQRLLSGKQSASVSIPMESYEVETSLVGDSGSLYATSESDNLMQHSIVVTGNIAQESTDEFSTVDSTASKYWHKSYDSINEHLLRSGKLGICNDPYCTTCPSYFKSSRLRNPKACNIPDPKFQNALNGDAKVFARKFCSLCSSFVPGVMNPHSKFIQQWNKVLASFCLVAIFVDPLFFFLLYDHNCIVINWKLTKALVIVRTMNDFIYFLHILLQFRLAFVSPESRVVGAGDLVDHPKQIAFHYLKGYFLVDLFVVFPLPQIMLLSVLPKSLRGANYAKNVLRAAILVQYIPRLFRFLPMLFGQSPAGFIFESAWANFIINLLIFILASHVVGSIWYLFALQRVNQCFRNACQSSHIPGCLAFIDCGHSHVGDNRLGLSSNQWNNNADAIACWNSSSSGSFSYGIYNNAVPLTTQADIVTKYIYALFWGLQQISTLAGNQTPSDFVFETLFTIAIIGLGLFLFALLIGNIQNFLQGLGRRRLEMQLRRGDVEQWMSH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4868g00001 525 Gene3D - 189 504 - -
Vium4868g00001 525 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 120 525 - -
Vium4868g00001 525 MobiDBLite consensus disorder prediction 1 20 - -
Vium4868g00001 525 SUPERFAMILY Voltage-gated potassium channels 179 507 - -
Vium4868g00001 525 Pfam Ion transport protein 189 507 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4868g00001 Vium-Chr4868 7 4023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4868g00001 1 525 Ion Channels AT3G17700 51.625 6.95e-166 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4868g00001 K05391 - vum:124839418 1029.24