Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4865g00006 ATGGAAGCGTCGCCGCCACCACGAACCATCCTCGGTAGGTACCAGCTCACGCGATTCCTTGGCCGCGGCAAATTCGCCAAGGTCTACCAGGCGCGCTCACTCGTCGACGGCGCCACGGTGGCCGTCAAGGTCATCGACAAGTCCAAGACGGTCGACGCCGCCATGGAACCCCGCATTGTGCGCGAGATCGACGCTATGCGCCGTCTCCAGAACCACCCAAACATCCTCAAAATCCACGAGGTTCTCGCCACGAAGACCAAAATTTACCTCGTCGTCGACTACGCCGGCGGCGGCGAGCTCTTCTCCAAGCTCTCCCGGTGTGGCCGCCTCCCGGAGTCTCGGGCGCGGCGCTATTTCTCCCAACTCGTCTCTGCGCTCCTCTTCTGCCACCGCCACGGCATCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGCCGGCGACCTTAAGGTCTCTGACTTCGGCCTCTCCGCACTCCCGGAACACCTCCGTGATAACCTCCTCCACACCGCATGTGGCACGCCGGCCTTCACTGCGCCGGAGGTCCTACGCCGCGTCGGCTACGACGGTTCCAAGGCCGACGCTTGGTCCTGCGGTGTCATTCTCTACAACCTTCTCGCCGGCCACCTCCCCTTTGACGATTCGAACATTCCTGCCATGTGCCGCCGAATATCCCGCCGCGACTATCAATTCCCGGCGTGGATCTCAAAATCCGCGCGCAGCCTCATCCACCAATTGCTGGACCCAAATCCTAAATCGCGAATTTCGCTTGACAGAGTTTTCGATAACAGATGGTTAAGGGATAAGAAGCATGTTTGA 828 0.6099 MEASPPPRTILGRYQLTRFLGRGKFAKVYQARSLVDGATVAVKVIDKSKTVDAAMEPRIVREIDAMRRLQNHPNILKIHEVLATKTKIYLVVDYAGGGELFSKLSRCGRLPESRARRYFSQLVSALLFCHRHGIAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHLRDNLLHTACGTPAFTAPEVLRRVGYDGSKADAWSCGVILYNLLAGHLPFDDSNIPAMCRRISRRDYQFPAWISKSARSLIHQLLDPNPKSRISLDRVFDNRWLRDKKHV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4865g00006 275 Pfam Protein kinase domain 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4865g00006 275 SUPERFAMILY Protein kinase-like (PK-like) 10 271 IPR011009 -
Vium4865g00006 275 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 271 - -
Vium4865g00006 275 PIRSF ILK 14 266 - -
Vium4865g00006 275 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vium4865g00006 275 ProSiteProfiles Protein kinase domain profile. 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4865g00006 275 Gene3D Transferase(Phosphotransferase) domain 1 7 275 - -
Vium4865g00006 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vium4865g00006 275 FunFam Non-specific serine/threonine protein kinase 7 99 - -
Vium4865g00006 275 FunFam Non-specific serine/threonine protein kinase 5 275 - -
Vium4865g00006 275 SMART serkin_6 14 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4865g00006 Vium-Chr4865 58771 60243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4865g00006 3 270 Miscellaneous Gene Families AT3G23000 67.537 1.47e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium4865g00006 Pkinase 5.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4865g00006 K12761 - gmx:100305372 482.256