Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4862g00004 ATGTCTAAGAGGGTTCTTTGTAAGTTCTTTGCTCATGGAGCCTGTCTGAAAGGGGAGCATTGTGAATATTCTCATGACTGGAAAGATCCTCCAAATAATATATGCACATTTTATCAGAAAGGAGTCTGTGCTTATGGTAGTCGTTGCAGATATGATCACATCAAAGCTTCTCAAGCGCAATCTTCCATTCCATCTTCTTCAGCAATTGAACACCATACTCTGGTTTCAGATACTGGTGCTTTTGGAAATATTATAACTACTTCAAATGGTGTTGGTACGGCTGCAGACTTGTCTCTTTCCAGTAGTCCGTACATTCTTCCTAGTGAACCGGCTTGGAATCATGAACTGGTTTGGAATCCAGAAATTGAGTATTATGAAATTTTAGGGGAAGACAATGTTGGTCAATCCATAATCACTTCACCTTCTGAGCTTTCAATTTGTTCATTTGCTGCTGCTGGCAACTGTCCACGAGGGGAACAATGTCCTCATATTCATGGGGATCTGTGTCCCACCTGTGGAAAGCATTGCTTACATCCTTTCAGACCTGAGGAAAGAGAAGAGCATATGAAGACTTGTGAAAGTAGGCATAAGTATCTTGATGCACTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTGTCAAAGCCTATATTAGCTGAGCGCAAGTTTGGGCTGCTATCCGAATGTGATCATCCATTTTGCATATCCTGTATTAGGAATTGGCGGAGTAGTAACCCAACATTGGGGATGGATGTTAATAGTACATTGAGGGCTTGTCCTATTTGTCGTAAGTTATCGTATTTTGTCATTCCAAGTGTCGTTTGGTACTCAACAACTGAAGAGAAACAAGAAATCATTGACAAATACAAGGAAAAGCTCAAGTCAATTGACTGCAAGCACTTTGACTTTGGGGATGGTAACTGCCCTTTCGGATCTAGTTGTTTCTACAAGCATGCATATCGAGATGGCCGTGTGGAGCAGGTAGTATTGCGACATCTAGGTGCTGCAGATGGAAATACCGTAATTGCAAAAGATATCAGGTTGTCGGATTTCCTTTCCAACATGCATTTAAGATGA 1092 0.413 MSKRVLCKFFAHGACLKGEHCEYSHDWKDPPNNICTFYQKGVCAYGSRCRYDHIKASQAQSSIPSSSAIEHHTLVSDTGAFGNIITTSNGVGTAADLSLSSSPYILPSEPAWNHELVWNPEIEYYEILGEDNVGQSIITSPSELSICSFAAAGNCPRGEQCPHIHGDLCPTCGKHCLHPFRPEEREEHMKTCESRHKYLDALKRSQEIECSVCLERVLSKPILAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVVWYSTTEEKQEIIDKYKEKLKSIDCKHFDFGDGNCPFGSSCFYKHAYRDGRVEQVVLRHLGAADGNTVIAKDIRLSDFLSNMHLR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4862g00004 363 SUPERFAMILY RING/U-box 202 274 - -
Vium4862g00004 363 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Vium4862g00004 363 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Vium4862g00004 363 SMART c3hfinal6 297 325 IPR000571 GO:0046872
Vium4862g00004 363 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Vium4862g00004 363 PANTHER MAKORIN-RELATED 5 346 IPR045072 GO:0000209|GO:0061630
Vium4862g00004 363 ProSitePatterns Zinc finger RING-type signature. 234 243 IPR017907 -
Vium4862g00004 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 306 IPR013083 -
Vium4862g00004 363 ProSiteProfiles Zinc finger RING-type profile. 210 268 IPR001841 -
Vium4862g00004 363 SMART ring_2 210 267 IPR001841 -
Vium4862g00004 363 SUPERFAMILY CCCH zinc finger 3 26 IPR036855 GO:0046872
Vium4862g00004 363 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Vium4862g00004 363 Gene3D - 33 168 - -
Vium4862g00004 363 Pfam RNA-binding, Nab2-type zinc finger 302 324 - -
Vium4862g00004 363 Pfam RNA-binding, Nab2-type zinc finger 6 25 - -
Vium4862g00004 363 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Vium4862g00004 363 Pfam Zinc finger, C3HC4 type (RING finger) 210 267 IPR018957 GO:0046872
Vium4862g00004 363 Gene3D - 1 32 - -
Vium4862g00004 363 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Vium4862g00004 363 CDD RING-HC_MKRN 208 268 - -
Vium4862g00004 363 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Vium4862g00004 363 ProSiteProfiles Zinc finger C3H1-type profile. 297 326 IPR000571 GO:0046872
Vium4862g00004 363 Pfam CCCH-type zinc finger 34 53 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4862g00004 Vium-Chr4862 20902 27361 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium4862g00004 zf-C3HC4 3.3e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4862g00004 K15687 - gmx:100787817 673.315