Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4851g00001 ATGGGCATCCACATGGAATGCCCTGCACCTCCACCTGCACCGCGGATCATGAATCTGTATCATGATCCTGCACGTTTTTGCCTTCTTATCCTCCTTCTCGTGCCGCCGGTCACGGCACAGTTTCAAAACTCGCCTCCGTCACCGTCGCAGTTGGATCCTTTCACGAGACTGAGGTTCGACAAGACCATGGCTGCGGTTCTCGTGATCCTCGTCGTCGTCTTCTTCGCTTTGGGATTCGTGTCCATCTACACGCGCCAATGCGCCGAGCGCCGGATCAGGGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGAGCGGCGGCAGCATCATGGGCTCGACCGGGCGACCGTGGACACATTCCCGACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAAGGCCACGCTGGAATGCGCTGTGTGCCTCAACGAGTTTCGCGACGACGAAACGTTGCGTTTGATCCCCAAATGCTGCCACGTGTTCCATCCCGATTGCATCGATGCATGGTTGGTGAATCACTCCACTTGTCCCGTTTGCCGCGCCAACCTCTCGCCGAAACCCGAGGACGCGCTTCCTCCCGTTGAGATTCACATTCCGGATTCGGCCCGGCCCAACGGGCCAAACGCAGAGCCCGATTATGATCCCAATTACATCAATCCTGTCCGTGAAAGTGAAGGTGAAGGTGAACGAAACAGAATAGTTACGGAGCCTCTTAGTTTAGATGATCCGAACCGGGTCCGTCCCGTTAGGTCTAGATCGACCGGTTTTGGAGTTTCAAGACTGTTTCCGCGTTCCCATTCAACGGGTCATTCTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCAGAGGATGTGAGGAACCAGCTCATGAGTTCTGGGACGCTGACCCGGACCAAGAGTTGTGGGGTGACGTGGGAGCGGCAGAGTAGTGGAAGGAGGGGTTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCGATACGAGCGGTTCGGTGGGGATGGGCGGTTGGACCGGTGGGGGTTTATGTGGACCCCACCGTTTTGGGGCAGAACCGGTTCGGGGAGATCAGCAAAGTCAACGAAGACGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCTTTTATTTACCAGAGATTAG 1170 0.5709 MGIHMECPAPPPAPRIMNLYHDPARFCLLILLLVPPVTAQFQNSPPSPSQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMERRQHHGLDRATVDTFPTFVYSEVKALKIGKATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLSPKPEDALPPVEIHIPDSARPNGPNAEPDYDPNYINPVRESEGEGERNRIVTEPLSLDDPNRVRPVRSRSTGFGVSRLFPRSHSTGHSLVRPGEDCERFTLRLPEDVRNQLMSSGTLTRTKSCGVTWERQSSGRRGYRTRSVGRSYLRYERFGGDGRLDRWGFMWTPPFWGRTGSGRSAKSTKTKDEVDVGERSSDLLFTRD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4851g00001 389 SMART ring_2 142 183 IPR001841 -
Vium4851g00001 389 MobiDBLite consensus disorder prediction 202 234 - -
Vium4851g00001 389 MobiDBLite consensus disorder prediction 366 389 - -
Vium4851g00001 389 CDD RING-H2_EL5-like 141 184 - -
Vium4851g00001 389 MobiDBLite consensus disorder prediction 361 389 - -
Vium4851g00001 389 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Vium4851g00001 389 Pfam Ring finger domain 141 184 IPR001841 -
Vium4851g00001 389 SUPERFAMILY RING/U-box 121 191 - -
Vium4851g00001 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Vium4851g00001 389 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vium4851g00001 389 PANTHER RING FINGER DOMAIN-CONTAINING 38 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4851g00001 Vium-Chr4851 21301 22902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4851g00001 28 380 Rapid Response to Elicitors AT3G05200 40.052 1.06e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4851g00001 K10664 - gmx:100815982 583.948