Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4850g00001 ATGGCAGGTGAGGTGGTGAAGAAGGAAGAGTCTCTGAACCTGAAAATCACCAACAAGAGTTATGTGCAACCTGAGGAGAAGATTGGGAGAAAAGAGTACCAGTTGGTGACTTTTGATCTTCCATACTTGGCCTTCTACTACAACCAGAAGCTACTGTTCTACAAAGGGGAAGACTTTGATGGCATGGTTCAGAAGCTGAAGCTTGGACTTGGTGTGGTTCTCAAGGAGTTTCACCAACTGGCTGGAAAGTTAGGGAAAGATGAAGAGGGTGTGTTCAGGGTTGAGTATGACGATGACATGCTTGGTGTGGAGGTTGTTGAAGCTGTTGCTGATGAGATTGCTGTGGATCAACTTACTGTGGCTGAAAGTTCCACCAATCTCAAGGACCTCATACCTTACACTGCTGTCTTGAACTTGGAAGGCATGCATAGACCCTTGCTCGCAGTTCAGTTAACGAAGCTGAAAGATGGGCTTGCGATGGGCCTGGCATTCAACCACGCTGTATTGGATGGGACTGCCACGTGGCAATTCATGACATCGTGGGCCGAGATTTGCAGCGGGTCACCCTCCACGTCAGCACCACCGTTCCTGGACCGGACCAAGGCCCGGAACACGAGAGTGAAGCTGGACCTCTCCCTGCCCGAGCCCAACGGCCAACCAACTTCCAACGGTGATGCAAAGCCCACTCCAACTCTTAGGGAAAGGATATTCAAATTCTCGGAGTCAAAGATCGACAAGATCAAGTCAACGATCAACGAGAACCCTCCATCGGACGGCTCAAAACCGTTCTCAACATTTCAAGCTCTTTCCTCCCATATCTGGCGCCATGTAAGCCATGCACGTAACCTGAAGCCGGAGGACTACACCGTGTTCACCGTCTTCGCCGACTGCCGGAAGAGGGTCGACCCACCGATGCCGGAGAATTACTTCGGAAACCTAATTCAAGCTATATTCACCGTTACGGCGGCTGGGCTTTTAGCGGCTCATCCGCCGCAATTCGGTGCTTCATTGGTCCAGAAGGCCATTGAAGATCACAATGCGAAGGCTATCGATGCACGTAACAAGGAGTGGGAGAGTGCACCGAAAATTTTCCAATTCAAAGATGCTGGGGTGAATTGCGTGGCTGTTGGAAGCTCACCTAGGTTTAAGGTTTACGACATTGATTTTGGGTGGGGTAAGGCTGAGAATGTGAGAAGTGGAACTAATAACAAGTTTGATGGGATGATTTACTTGTATCCAGGGAAGAATGGAGGAAGGAGCATTGATGTGGAACTAACCTTGGAGCCTGAGGCTATGGCGAGGTTGGAGAAAGATAAGGATTTTCTTTTGGAAGCATGA 1338 0.4955 MAGEVVKKEESLNLKITNKSYVQPEEKIGRKEYQLVTFDLPYLAFYYNQKLLFYKGEDFDGMVQKLKLGLGVVLKEFHQLAGKLGKDEEGVFRVEYDDDMLGVEVVEAVADEIAVDQLTVAESSTNLKDLIPYTAVLNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTATWQFMTSWAEICSGSPSTSAPPFLDRTKARNTRVKLDLSLPEPNGQPTSNGDAKPTPTLRERIFKFSESKIDKIKSTINENPPSDGSKPFSTFQALSSHIWRHVSHARNLKPEDYTVFTVFADCRKRVDPPMPENYFGNLIQAIFTVTAAGLLAAHPPQFGASLVQKAIEDHNAKAIDARNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKAENVRSGTNNKFDGMIYLYPGKNGGRSIDVELTLEPEAMARLEKDKDFLLEA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4850g00001 445 Pfam Transferase family 14 441 - -
Vium4850g00001 445 FunFam Tryptamine hydroxycinnamoyl transferase 218 439 - -
Vium4850g00001 445 MobiDBLite consensus disorder prediction 211 230 - -
Vium4850g00001 445 Gene3D - 11 212 IPR023213 -
Vium4850g00001 445 Gene3D - 214 438 IPR023213 -
Vium4850g00001 445 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4850g00001 Vium-Chr4850 50494 53609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4850g00001 64 444 Monolignol Biosynthesis Gene Families AT5G48930 26.303 8.98e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4850g00001 K19747 - gmx:100790669 818.15