Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4849g00009 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGAGGCCTACCTGCCACCGGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGACTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGACGACGCGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGTTCACGCTCACGATCACATTCTCGTTCGCGCTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGGTCTCAGTCTCGTGGAGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTCGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTAGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCTGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGATCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCCCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACGTTTGCCCAGCAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGACGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGCTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCAGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAGTGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTACTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTTGGAGGGACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATGGTTCATCTTCAGCAAATGTTGATCCACAGACGGTTGCTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAACTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCCGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTAGCCAGGTTTCGGGAGATGTCAGACAATTAA 3108 0.4604 MDPGRYALHQGWDNNSALEGYGAVHEPNFREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGSVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKSEIMVRETNASNPGIHTTLAQVTAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHGSSSANVDPQTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4849g00009 1035 SMART G-patch_5 955 1001 IPR000467 GO:0003676
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 735 755 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 735 760 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 628 654 - -
Vium4849g00009 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 439 505 IPR000504 GO:0003723
Vium4849g00009 1035 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 341 IPR000504 GO:0003723
Vium4849g00009 1035 Gene3D - 421 542 IPR012677 -
Vium4849g00009 1035 CDD OCRE_SUA_like 576 628 IPR035623 -
Vium4849g00009 1035 SUPERFAMILY RNA-binding domain, RBD 435 524 IPR035979 GO:0003676
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 29 69 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 47 69 - -
Vium4849g00009 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 360 IPR000504 GO:0003723
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 555 579 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 222 274 - -
Vium4849g00009 1035 Gene3D - 260 367 IPR012677 -
Vium4849g00009 1035 SMART zf_4 384 408 IPR001876 -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 106 195 - -
Vium4849g00009 1035 SUPERFAMILY RNA-binding domain, RBD 271 365 IPR035979 GO:0003676
Vium4849g00009 1035 SMART rrm1_1 438 513 IPR000504 GO:0003723
Vium4849g00009 1035 SMART rrm1_1 281 356 IPR000504 GO:0003723
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 196 221 - -
Vium4849g00009 1035 Pfam OCRE domain 579 627 IPR041591 -
Vium4849g00009 1035 Pfam G-patch domain 958 999 IPR000467 GO:0003676
Vium4849g00009 1035 PANTHER RNA-BINDING PROTEIN 172 1030 - -
Vium4849g00009 1035 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 437 517 IPR000504 GO:0003723
Vium4849g00009 1035 ProSiteProfiles Zinc finger RanBP2 type profile. 382 411 IPR001876 -
Vium4849g00009 1035 Gene3D - 380 412 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 808 837 - -
Vium4849g00009 1035 ProSiteProfiles G-patch domain profile. 957 1003 IPR000467 GO:0003676
Vium4849g00009 1035 ProSitePatterns Zinc finger RanBP2-type signature. 386 405 IPR001876 -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 93 277 - -
Vium4849g00009 1035 MobiDBLite consensus disorder prediction 813 837 - -
Vium4849g00009 1035 CDD RRM1_RRM2_RBM5_like 435 515 - -
Vium4849g00009 1035 SUPERFAMILY Ran binding protein zinc finger-like 377 412 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4849g00009 Vium-Chr4849 8468 16600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4849g00009 279 501 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.21e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4849g00009 K13094 - gmx:100787998 1675.22