Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4849g00008 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTCGGTGGTTCCTATGATGAGAGAAGGTTTCTTGATGAAAGATATCCAAGGGATCCAGTTTACCAGAGAAATAATTTCCACCCTGACATTTTGGATAGGGAGGCCTACCTGCCACCGGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGACTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGACGACGCGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGTTCACGCTCACGATCACATTCTCGTTCGCGCTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGGTCTCAGTCTCGTGGAGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTCGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTAGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCTGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGATCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCCCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACGTTTGCCCAGCAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGACGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGCTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCAGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAGTGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTACTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTTGGAGGGACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATGGTTCATCTTCAGCAAATGTTGATCCACAGACGGTTGCTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAACTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCCGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTAGCCAGGTTTCGGGAGATGTCAGACAATTAA 3207 0.459 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGSVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKSEIMVRETNASNPGIHTTLAQVTAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHGSSSANVDPQTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4849g00008 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 374 IPR000504 GO:0003723
Vium4849g00008 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 472 538 IPR000504 GO:0003723
Vium4849g00008 1068 Gene3D - 454 575 IPR012677 -
Vium4849g00008 1068 PANTHER RNA-BINDING PROTEIN 205 1063 - -
Vium4849g00008 1068 SMART G-patch_5 988 1034 IPR000467 GO:0003676
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 255 307 - -
Vium4849g00008 1068 Gene3D - 413 445 - -
Vium4849g00008 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 393 IPR000504 GO:0003723
Vium4849g00008 1068 Pfam G-patch domain 991 1032 IPR000467 GO:0003676
Vium4849g00008 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 470 550 IPR000504 GO:0003723
Vium4849g00008 1068 Gene3D - 293 400 IPR012677 -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 67 86 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 841 870 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 661 687 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 163 310 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 229 254 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 846 870 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 130 149 - -
Vium4849g00008 1068 CDD RRM1_RRM2_RBM5_like 468 548 - -
Vium4849g00008 1068 SMART zf_4 417 441 IPR001876 -
Vium4849g00008 1068 ProSitePatterns Zinc finger RanBP2-type signature. 419 438 IPR001876 -
Vium4849g00008 1068 SUPERFAMILY RNA-binding domain, RBD 468 557 IPR035979 GO:0003676
Vium4849g00008 1068 ProSiteProfiles G-patch domain profile. 990 1036 IPR000467 GO:0003676
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 588 612 - -
Vium4849g00008 1068 CDD OCRE_SUA_like 609 661 IPR035623 -
Vium4849g00008 1068 Pfam OCRE domain 612 660 IPR041591 -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 768 793 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 768 788 - -
Vium4849g00008 1068 MobiDBLite consensus disorder prediction 163 228 - -
Vium4849g00008 1068 SMART rrm1_1 471 546 IPR000504 GO:0003723
Vium4849g00008 1068 SMART rrm1_1 314 389 IPR000504 GO:0003723
Vium4849g00008 1068 ProSiteProfiles Zinc finger RanBP2 type profile. 415 444 IPR001876 -
Vium4849g00008 1068 SUPERFAMILY RNA-binding domain, RBD 304 398 IPR035979 GO:0003676
Vium4849g00008 1068 SUPERFAMILY Ran binding protein zinc finger-like 410 445 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4849g00008 Vium-Chr4849 8468 16600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4849g00008 312 534 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.23e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4849g00008 K13094 - gmx:100787998 1756.11