Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4849g00003 ATGGAATATGGGGATCATTATTCAAAGAAACTACTATTAGGGTTTCAATCTGATTTTTTATCGGAGAATTGTGAAAGAAAGCTAGCTGTGGGGGCAGTCAGATATGGACTCCATTTGCCTAACCCTCGTCCCATTGATTATTTGTTCCTGACACAGCTTATTCTCTTGAATCCACAGGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGTCGGTGGTTCCTATGATGAGAGAAGGTTTCTTGATGAAAGATATCCAAGGGATCCAGTTTACCAGAGAAATAATTTCCACCCTGACATTTTGGATAGGGAGGCCTACCTGCCACCGGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGACTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGACGACGCGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGTTCACGCTCACGATCACATTCTCGTTCGCGCTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGGTCTCAGTCTCGTGGAGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTCGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTAGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCTGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGATCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCCCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACGTTTGCCCAGCAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGACGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGCTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCAGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAGTGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTACTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTTGGAGGGACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATGGTTCATCTTCAGCAAATGTTGATCCACAGACGGTTGCTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAACTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCCGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTAGCCAGGTTTCGGGAGATGTCAGACAATTAA 3336 0.455 MEYGDHYSKKLLLGFQSDFLSENCERKLAVGAVRYGLHLPNPRPIDYLFLTQLILLNPQALEGYGAVHEPNFRVGGSYDERRFLDERYPRDPVYQRNNFHPDILDREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGSVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKSEIMVRETNASNPGIHTTLAQVTAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHGSSSANVDPQTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 272 297 - -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 206 353 - -
Vium4849g00003 1111 SMART G-patch_5 1031 1077 IPR000467 GO:0003676
Vium4849g00003 1111 ProSitePatterns Zinc finger RanBP2-type signature. 462 481 IPR001876 -
Vium4849g00003 1111 SUPERFAMILY RNA-binding domain, RBD 511 600 IPR035979 GO:0003676
Vium4849g00003 1111 PANTHER RNA-BINDING PROTEIN 248 1106 - -
Vium4849g00003 1111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 436 IPR000504 GO:0003723
Vium4849g00003 1111 SMART zf_4 460 484 IPR001876 -
Vium4849g00003 1111 Pfam G-patch domain 1034 1075 IPR000467 GO:0003676
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 889 913 - -
Vium4849g00003 1111 Gene3D - 336 443 IPR012677 -
Vium4849g00003 1111 CDD RRM1_RRM2_RBM5_like 511 591 - -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 704 730 - -
Vium4849g00003 1111 Pfam OCRE domain 655 703 IPR041591 -
Vium4849g00003 1111 SUPERFAMILY Ran binding protein zinc finger-like 453 488 IPR036443 -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 884 913 - -
Vium4849g00003 1111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 513 593 IPR000504 GO:0003723
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 811 836 - -
Vium4849g00003 1111 ProSiteProfiles Zinc finger RanBP2 type profile. 458 487 IPR001876 -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 811 831 - -
Vium4849g00003 1111 CDD OCRE_SUA_like 652 704 IPR035623 -
Vium4849g00003 1111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 581 IPR000504 GO:0003723
Vium4849g00003 1111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 417 IPR000504 GO:0003723
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 173 192 - -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 298 350 - -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 631 655 - -
Vium4849g00003 1111 SUPERFAMILY RNA-binding domain, RBD 347 441 IPR035979 GO:0003676
Vium4849g00003 1111 Gene3D - 456 488 - -
Vium4849g00003 1111 ProSiteProfiles G-patch domain profile. 1033 1079 IPR000467 GO:0003676
Vium4849g00003 1111 SMART rrm1_1 357 432 IPR000504 GO:0003723
Vium4849g00003 1111 SMART rrm1_1 514 589 IPR000504 GO:0003723
Vium4849g00003 1111 Gene3D - 497 618 IPR012677 -
Vium4849g00003 1111 MobiDBLite consensus disorder prediction 206 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4849g00003 Vium-Chr4849 8468 16600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4849g00003 355 577 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.02e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4849g00003 K13094 - gmx:100787998 1720.67