Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4849g00001 ATGGAATATGGGGATCATTATTCAAAGAAACTACTATTAGGGTTTCAATCTGATTTTTTATCGGAGAATTGTGAAAGAAAGCTAGCTGTGGGGGCAGTCAGATATGGACTCCATTTGCCTAACCCTCGTCCCATTGATTATTTGTTCCTGACACAGCTTATTCTCTTGAATCCACAGGCTCTTGAGGGATACGGCGCCGTCCACGAGCCCAACTTCCGGGAGGCCTACCTGCCACCGGGACCACCTCCTGTTGGCCACTGGAGTCAATCCAAACGAAGAGGTTATGATGAAGATTATCCTCTTGACAGGGAATCTAGACGTTTTCAGAGGCCCTATCATGAATCATATAATCAGATAGATGGTTTCAGGGATCGTGAGATTGACACCTACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGACCGAGGATATGATAAGCCTGCCAGATTTTCAGGACATGAACGTGATGATTATGCCTATGAAGATTATGACTACAAGTCCCGGGCTTCCTCTCATCATCGTAGGGAGGATAGCCATGACAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGACTATGAAAGAGGTAGTAGAAGAGACAGTAATTGGAGACGACGCGAATCACGTGATCGGGAACGTGATAAGAGAGGTCATAGTCGGGAAGGAGAACTGAGTCCACGTAGGAGGCATGAGCGTTCACGCTCACGATCACATTCTCGTTCGCGCTCACGTTCTCGATCCCGATCCCATTCTCACTCCCATTCTCATTCCCGGTCTCAGTCTCGTGGAGATGACCATCCAAGATCGAGGTCCCCTCGAGGTCGAAGCCATGGTAGAAGTTATAGGGAAGGTAGCTATACTGAGAGTCGATATGATAAAGGTGAAAGACGTCGGGATCGCGATGATAAACGACAGCGCGAACATTATTCTGTGGCCCCATCTGCAACCGTTGTAGTGAAAGGTCTTTCGCAGAAGACAACCGATGAAGATCTATACCAAATCCTTGCTGAATGGGGGCCCCTTCGTCACGTTCGAGTTATAAAGGAGAGAAATTCTGGAGTCTCTCGTGGATTTGCATTTATAGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTAGGAGACGATGGTTTTGTTGTCGATGGCAGAAAACTTTTCTTTGAATATAGTAGCAAGCCAACTGGAGGTCCTGGTCCGGATGGATCTGTGAAATCAGGTCATAATTATAAGAGCATTACGGTTCCATCTGATTGGATGTGCACTGTATGTGGCTACATAAATTTTGCACGCCGAACATCCTGCTATCAGTGTAATGAGCCTCGAACTGACGATGCTCCTGCAGCAGACATTTCATTATCAAATTCAGCAGCTACCGGAAAAAAAGGTTTGGAAGCTGGTCCAACTCATGTTTTGGTTGTCCGAGGATTGGATGAAAATGCTGACGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGATAAATTCACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAAGATGCTACCAAAGCCCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCATATGCAAAAAGTATCCTGGGCCCTGGGTCAGGAACATCAGGAACGTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATTGAAGCTGCAACGTTTGCCCAGCAGTATGATTCAGTGGGATGGGCTCCAAAAGAGTATAACCCAGACGACAAACTATCTACTGGTCAAGAGCAACCTGGCACAGAAGTTGGTGCTCCACAATCGGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGCTTTTACTATGACGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTATATACCTTGCACTGATCAAAATCAGAATAAAGCACCTAATAATGAGTCTGAACCTTCTAAAACATCTGATGGTTCTGGAAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTATATCGGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCAGCAACAGCAGCTTTAGCTGCAGAGAAGAAAGAAAAGGAAAAATCAAAGGAAATAAAGCTTGCATCAAAGAGCAGCATTCTGGCAAATAAGAAAAAAATGAACAATGTATTAACAATGTGGAAGCAGAGGAGCCATGAGGGACAGGCTACTAGAGTGGCTCTGGAAGACAATCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTGCCGGGCATTCTGCTAAGAATAAGTCAAAAAGTGAGATTATGGTAAGGGAAACTAATGCTTCTAATCCAGGAATTCACACAACTCTTGCCCAGGTTACTGCTATTGATTCTCAGGCACAGCCACGGCCGGTTAGTAATAGTCTTGGAGGGACTGTGATGGGGGTCATAAGGGGCTCAGGAAGGGGGGTTGCTAAATCAGATAGTTATTCAGGTTCTACATCTGTTGCATCATCTATGCATGGTTCATCTTCAGCAAATGTTGATCCACAGACGGTTGCTACTCCCTTTAGAACAGATGTGTCTGCCCTGAGTTCATATACACCGCCTGCTACAGTTGGAAGTGGGCGAAGAAGGTTTTCAGAAATGCCTCTTCCTGCTTCAACTCACAAGGAACAACCTCAGACAACTTACCGGGATCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGTTGGAAATGATTTGGCTGACCTTGACATTGGGGATTCAAACCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCGTTCCCTCCCGGGGTTGGTGGTGGACGTGTAGTTGGAGATGTCAACGTTGATACTTTTGAGGTGATTACGGCAGACAAAGCAATTGATGAAAACAATGTCGGTAATAGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGATAGAGCCTGTCCTGGCACAAGCCACCGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCCCTAGCCAGGTTTCGGGAGATGTCAGACAATTAA 3237 0.4563 MEYGDHYSKKLLLGFQSDFLSENCERKLAVGAVRYGLHLPNPRPIDYLFLTQLILLNPQALEGYGAVHEPNFREAYLPPGPPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREIDTYPEYERFRDGYTGIENYGDRGYDKPARFSGHERDDYAYEDYDYKSRASSHHRREDSHDRDYDHGRHSYDSDYERGSRRDSNWRRRESRDRERDKRGHSREGELSPRRRHERSRSRSHSRSRSRSRSRSHSHSHSHSRSQSRGDDHPRSRSPRGRSHGRSYREGSYTESRYDKGERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTDEDLYQILAEWGPLRHVRVIKERNSGVSRGFAFIDFPSVGAAQGMMDKLGDDGFVVDGRKLFFEYSSKPTGGPGPDGSVKSGHNYKSITVPSDWMCTVCGYINFARRTSCYQCNEPRTDDAPAADISLSNSAATGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKLSTGQEQPGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYIPCTDQNQNKAPNNESEPSKTSDGSGSKKVISAPATTVISVEKPASLADAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNQPSVSADDRSYSAGHSAKNKSKSEIMVRETNASNPGIHTTLAQVTAIDSQAQPRPVSNSLGGTVMGVIRGSGRGVAKSDSYSGSTSVASSMHGSSSANVDPQTVATPFRTDVSALSSYTPPATVGSGRRRFSEMPLPASTHKEQPQTTYRDRAAERRSLYGSSSSVGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRVVGDVNVDTFEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSDN 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4849g00001 1078 ProSiteProfiles G-patch domain profile. 1000 1046 IPR000467 GO:0003676
Vium4849g00001 1078 SMART rrm1_1 324 399 IPR000504 GO:0003723
Vium4849g00001 1078 SMART rrm1_1 481 556 IPR000504 GO:0003723
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 173 238 - -
Vium4849g00001 1078 SUPERFAMILY RNA-binding domain, RBD 478 567 IPR035979 GO:0003676
Vium4849g00001 1078 Pfam G-patch domain 1001 1042 IPR000467 GO:0003676
Vium4849g00001 1078 Gene3D - 464 585 IPR012677 -
Vium4849g00001 1078 SUPERFAMILY RNA-binding domain, RBD 314 408 IPR035979 GO:0003676
Vium4849g00001 1078 Gene3D - 423 455 - -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 598 622 - -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 265 317 - -
Vium4849g00001 1078 CDD OCRE_SUA_like 619 671 IPR035623 -
Vium4849g00001 1078 PANTHER RNA-BINDING PROTEIN 215 1073 - -
Vium4849g00001 1078 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 403 IPR000504 GO:0003723
Vium4849g00001 1078 SUPERFAMILY Ran binding protein zinc finger-like 420 455 IPR036443 -
Vium4849g00001 1078 Gene3D - 303 410 IPR012677 -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 851 880 - -
Vium4849g00001 1078 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 482 548 IPR000504 GO:0003723
Vium4849g00001 1078 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 384 IPR000504 GO:0003723
Vium4849g00001 1078 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 480 560 IPR000504 GO:0003723
Vium4849g00001 1078 Pfam OCRE domain 622 670 IPR041591 -
Vium4849g00001 1078 ProSiteProfiles Zinc finger RanBP2 type profile. 425 454 IPR001876 -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 173 320 - -
Vium4849g00001 1078 ProSitePatterns Zinc finger RanBP2-type signature. 429 448 IPR001876 -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 239 264 - -
Vium4849g00001 1078 SMART G-patch_5 998 1044 IPR000467 GO:0003676
Vium4849g00001 1078 CDD RRM1_RRM2_RBM5_like 478 558 - -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 671 697 - -
Vium4849g00001 1078 SMART zf_4 427 451 IPR001876 -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 778 803 - -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 856 880 - -
Vium4849g00001 1078 MobiDBLite consensus disorder prediction 778 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4849g00001 Vium-Chr4849 8468 16600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4849g00001 322 544 Eukaryotic Initiation Factors Gene Family AT2G36660 24.800 1.02e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4849g00001 K13094 - gmx:100787998 1639.78