Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00030 TTTACAGGGCCAATACCATCAGAGCTAGGGAACCTAGTGAATCTTCGGACTTTGAATCTGGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTATCAAAGTGCACCCAAATGGACAAGTTTGATGTCGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTCTGCAGAGCTGGACAAGGTTAACCACGTTAATTTTGAGCGAGAATCGCTTTAGTGGGGGCCTCCCATCTTTCCTGTCGGAATTCAAGATGATTTCTGAGCTACAACTTGGTGGCAATCTGTTCGGAGGCAAAATTCCCATATCAGTTGGAGCAATGCAGAACTTGATCTATGGTTTGAATCTAAGTTCAAATGGGTTGACTGGTGAAATTCCTGTAGAGATTAGGAACCTGAAAATGTTGCGAACACTAGCTCTGTCTCATAACAATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCATCTCCTTAGTGGAACTCAATATTTCATACAATTCTTTTAGTGGTATTGTACCAAAGGCGCTGATGAAGTTGCTTAATTGTCCCTTGTCATCGTTCCTGGGCAATCCTGGCCTATGCATCAGATGTTCAACGTCAGATTGCTTGGCTTGCTCGGAAAGAAGCTCTCTAAAATCATGCGATGACAAATCTGCTAAACGGAAAGGCTTGAGTAAAGTTCAAATTGTGAAGATGTTTCTTGGATTATCCATATTTCTTGGTTTGTCGTTGCTGGCATTAGTTTGTGTTGTTGTTTTTGGGAGAACAGCTAAGCAGGAAAACCATATCTCTTCTGAACAGGGTTCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGATATATTATTGGTAGAGGAGCCCACGGAATTGTTTATAAAGTTCTGATAGGTCCAGACAAAGCTTTTGCGGTGAAAAAGATAAGATTTACTGCCAGTCAAGGTAAGAACTCGAGCATGGCCAGAGAAATTCAGACCCTTGGGAAAATCAGGCATCGAAATCTTGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTGTGGTCTAATTTTGTACAGCTACATGGTAAATGGAAGTCTCCATGATGTTTTGCATGAAAGGGCTCCAACACCAACCTTAAAGTGGAATGTCCGGTATGAGATAGCTGTTGGAATTGCTCATGGATTAGCTTATCTCCACTATGACTGTGACCCTCCCATCGTGCACCGAGACATCAAGCCCAGCAATATACTTCTAGACTCCGACATGGTGCCTCACATTGCTGACTTTGGTATTGCCAAACTTCTGGAACAGTCTTCTCCTGCTTCAAATACTTCCATTGCTGTGCCGGGTACAATTGGTTATATTGCTCCAGAGAATGCTTATGCAACAAGTAGTAGGGAGTCTGATGTGTACAGTTACGGGGTTGTTTTGCTTGAGCTGATAACAAGAAAGAAGGCAGCCACAGATCCTTCGTATCAGGATGGTGTTTTGGTGGATTGGGTTAGGTCTGTCTGGAGGGAAACAGGACAAATTCATCAAATTGCTGATTCAATACTTTCCTGCGAATTTGCTGATACCCATATAATGGAAAACCTTACTAAAGTGTTTTTGGTTGGTTTGAGATGTACTGAGAAGGATCCACACAAGAGACCCACAATGAGAGATGTTATTAATCAATTAAACTAG 1686 0.4181 FTGPIPSELGNLVNLRTLNLAHNNLEGPLPSQLSKCTQMDKFDVGFNFLNGSLPSSLQSWTRLTTLILSENRFSGGLPSFLSEFKMISELQLGGNLFGGKIPISVGAMQNLIYGLNLSSNGLTGEIPVEIRNLKMLRTLALSHNNLTGSIEVLGELISLVELNISYNSFSGIVPKALMKLLNCPLSSFLGNPGLCIRCSTSDCLACSERSSLKSCDDKSAKRKGLSKVQIVKMFLGLSIFLGLSLLALVCVVVFGRTAKQENHISSEQGSSSLLNKVMEATENLNDRYIIGRGAHGIVYKVLIGPDKAFAVKKIRFTASQGKNSSMAREIQTLGKIRHRNLVKLEDFWLRKDCGLILYSYMVNGSLHDVLHERAPTPTLKWNVRYEIAVGIAHGLAYLHYDCDPPIVHRDIKPSNILLDSDMVPHIADFGIAKLLEQSSPASNTSIAVPGTIGYIAPENAYATSSRESDVYSYGVVLLELITRKKAATDPSYQDGVLVDWVRSVWRETGQIHQIADSILSCEFADTHIMENLTKVFLVGLRCTEKDPHKRPTMRDVINQLN 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00030 561 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 80 203 - -
Vium4846g00030 561 ProSiteProfiles Protein kinase domain profile. 284 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4846g00030 561 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Vium4846g00030 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Vium4846g00030 561 SUPERFAMILY Protein kinase-like (PK-like) 269 560 IPR011009 -
Vium4846g00030 561 Gene3D Phosphorylase Kinase; domain 1 254 360 - -
Vium4846g00030 561 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 560 - -
Vium4846g00030 561 FunFam Serine/threonine-protein kinase-like protein CCR4 361 561 - -
Vium4846g00030 561 SUPERFAMILY L domain-like 2 195 - -
Vium4846g00030 561 Gene3D Transferase(Phosphotransferase) domain 1 361 561 - -
Vium4846g00030 561 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 79 - -
Vium4846g00030 561 Pfam Leucine Rich Repeat 14 36 IPR001611 GO:0005515
Vium4846g00030 561 ProSitePatterns Protein kinases ATP-binding region signature. 290 313 IPR017441 GO:0005524
Vium4846g00030 561 Gene3D Ribonuclease Inhibitor 1 205 IPR032675 -
Vium4846g00030 561 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4846g00030 561 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 251 360 - -
Vium4846g00030 561 Pfam Protein kinase domain 289 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00030 Vium-Chr4846 156997 159067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4846g00030 1 560 Receptor kinase-like Gene Family AT1G73080 52.890 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium4846g00030 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00030 - - vum:124839377 1108.2