Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00026 ATGATGTTATTGAACGTTATCCAATTAGGTTTAGAAGAACTTACCCTAACTATCTATCTTTCGCCATTGCAAAATTCTAATTCTGTTGCTATTTCCTCTCCATTTCTTTCTCATCAATTTGCAGCGTCGAATGGCGACATCGAAGCATGTTCAGAAAGCGAACCCATCTTGAATCACCACCATCTTCATTTGCAACCACCTGGAGAATCCTCCTTGTCCTGTGAAATTATTCCTATTGCTCCAAACCATGATGATGTCGACCATGATTTACCAAGTATTCGGGTTGATGAGATTTGTCATCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCACCATGCCATTGCAAAGGTACGCAAAAGTACGTTCACAGATCATGTCTTGATAATTGGAGATCCACCAAGGAGGGCTTCGCCTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCATTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAAATTTTATGGAGATGAACTGAGGGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTTCTAGCCATTGTTTTGGTGGGATTGCTCTATGGCTTTTTCATAGCGATAATATGTGGCCAAAGAATTAATGAACGCCACTATCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTGCCTGAACTTGATCCTAGTCACGTGACAGAGCTAAGGATGTTGGGCCTTTACTAG 891 0.404 MMLLNVIQLGLEELTLTIYLSPLQNSNSVAISSPFLSHQFAASNGDIEACSESEPILNHHHLHLQPPGESSLSCEIIPIAPNHDDVDHDLPSIRVDEICHLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYKFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00026 296 Pfam RING-variant domain 109 156 IPR011016 GO:0008270
Vium4846g00026 296 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 229 296 - -
Vium4846g00026 296 SMART ringv_2 108 157 IPR011016 GO:0008270
Vium4846g00026 296 SUPERFAMILY RING/U-box 104 160 - -
Vium4846g00026 296 CDD RING_CH-C4HC3_MARCH 109 157 - -
Vium4846g00026 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 161 IPR013083 -
Vium4846g00026 296 ProSiteProfiles Zinc finger RING-CH-type profile. 101 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00026 Vium-Chr4846 122273 125811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4846g00026 69 255 C3H Transcription Factor Family AT1G50440 65.969 2.07e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00026 - - vun:114185559 587.8