Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00011 ATGTTGGTTAAAATTCAAACAAATTGGTTTGTCCCGGTTGCAGTTCCATTCTCAGTCCCACACAAGCTCGAGGGTTGTTTTGTGATGAGTAAGTGCGTGTTATCCACGCATACTCCTACTCTATTTGAAGTCGATAATGATAAAGCAAGAAGAAGAAGAAGAAGATCAAATTGGAGTTGTGGTTGTGGTTCGGAGGAGGCAAATGTACAGAGACAGGATCTCTCTGAATCTGAATCCAAACGGGAATTGGAAGTGCAGGAAGCTCGCAGGGCCATTTCAAGTTATCTCGGAGAATTGGGAGTGTCAGAGGAGGAATCGTTGTCCATCGCGTGGAATTGCCCGGGGTATGTGAAGATGTTGGTGGAAGGTGTGAGGGATTTGGATGAGTGGGGTTGGGAGACAGATGAAGAAATTGAGGGATTGAGCTTCAAGGACAAGATTCTTCGTGTTGCCGCTCAAAAAGGAGACAAGGGGAAAATTGCCTACTTAGAGACTCTCGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCGCTCACACCCTCCCCTCTCTAATACACAAGGTTACGCGCATCAAGCAACTCTTCTTTTCTCCTCCCGATAACGACGGCGATCACCACCCCTCGTTGCTCATGAGAAACATTCTCCTCACCATGCGCCACTTGTCCATTTCAATTGACGAAGACCTGCAACGCACTTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCTTAAACATCTTGGCTTCCCAAGATTCTGCTTTCTCTTCCTTAATCCAATCCTTCCCTCGTATGCTTCACTTATCCTTAGATAACCACTTAACACTCATACTGGATTCTCTCCTCAACTTTGGAATCCCCACATCTCGCATCTCACGCATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAAATCCTGCAAACTAGACTCCTCGCCGTCAAGCAGATTAACGTTGCTGATCAAGATTATGCCAAGTTTCTGCTAAAATATCCTTGGTTTCTGTCGACAAGTATTCAAGAAAATTATGCGGAGCTCCTTGCTTTTTCGTATTCTATCAAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGAAACTATAGGAAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTTCCAGCATTAATAAAACTTTACAAAGGAAGATTGAGTTCCTTGGTAGGGTTGGCATTTGTAAGGCTTTCCTACCTGGGGTTATCAGAAAGTATCCTGAATTACTTGTATCTGACATTGACAAAACTTTACTACTAAGGATAATATACTTGATGAAGTTAGGTCTTTCAGAAGAAGAGATAGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATAGAATTCCTGGTGAACTCAATGGAGAGGCCAGTAAGAGATGTGGTGAGTTACCCTCGGTATTTTAGCTATTCACTAGAGAAGAAAATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCCGCTGAGTTTATGGGTATTGGAGGGATGCCCGTCTCTCATCCCGTTTCTTCTAATGATAGCCTGTAA 1650 0.4291 MLVKIQTNWFVPVAVPFSVPHKLEGCFVMSKCVLSTHTPTLFEVDNDKARRRRRRSNWSCGCGSEEANVQRQDLSESESKRELEVQEARRAISSYLGELGVSEEESLSIAWNCPGYVKMLVEGVRDLDEWGWETDEEIEGLSFKDKILRVAAQKGDKGKIAYLETLGLTLSWSINVAGYLSAHTLPSLIHKVTRIKQLFFSPPDNDGDHHPSLLMRNILLTMRHLSISIDEDLQRTFSFFEKLQAKPGGLNILASQDSAFSSLIQSFPRMLHLSLDNHLTLILDSLLNFGIPTSRISRIILAFPPLLFWNLQILQTRLLAVKQINVADQDYAKFLLKYPWFLSTSIQENYAELLAFSYSIKIVLLFENMDLDKETIGRILARCPEIFASSINKTLQRKIEFLGRVGICKAFLPGVIRKYPELLVSDIDKTLLLRIIYLMKLGLSEEEIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGGMPVSHPVSSNDSL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00011 549 Pfam mTERF 363 528 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 Pfam mTERF 283 360 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 FunFam Mitochondrial transcription termination factor family protein 353 535 - -
Vium4846g00011 549 Gene3D Transcription termination factor 3, mitochondrial 360 535 IPR038538 -
Vium4846g00011 549 Gene3D Transcription termination factor 3, mitochondrial 248 359 IPR038538 -
Vium4846g00011 549 PANTHER CGI-12 PROTEIN-RELATED 437 532 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 482 513 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 297 327 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 377 408 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 413 444 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 449 481 IPR003690 GO:0003690|GO:0006355
Vium4846g00011 549 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00011 Vium-Chr4846 60280 66593 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4846g00011 mTERF 2.7e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00011 K15031 - gmx:100802127 587.03