Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00010 ATGTTGGTTAAAATTCAAACAAATTGGTTTGTCCCGGTTGCAGTTCCATTCTCAGTCCCACACAAGCTCGAGGGTTGTTTTGTGATGAGTAAGTGCGTGTTATCCACGCATACTCCTACTCTATTTGAAGTCGATAATGATAAAGCAAGAAGAAGAAGAAGAAGATCAAATTGGAGTTGTGGTTGTGGTTCGGAGGAGGCAAATGTACAGAGACAGGATCTCTCTGAATCTGAATCCAAACGGGAATTGGAAGTGCAGGAAGCTCGCAGGGCCATTTCAAGTTATCTCGGAGAATTGGGAGTGTCAGAGGAGGAATCGTTGTCCATCGCGTGGAATTGCCCGGGGTATGTGAAGATGTTGGTGGAAGGTGTGAGGGATTTGGATGAGTGGGGTTGGGAGACAGATGAAGAAATTGAGGGATTGAGCTTCAAGGACAAGATTCTTCGTGTTGCCGCTCAAAAAGGAGACAAGGGGAAAATTGCCTACTTAGAGACTCTCGGTCTCACTCTCTCTTGGTCTATCAACGTCGCCGGATATCTCTCCGCTCACACCCTCCCCTCTCTAATACACAAGGTTACGCGCATCAAGCAACTCTTCTTTTCTCCTCCCGATAACGACGGCGATCACCACCCCTCGTTGCTCATGAGAAACATTCTCCTCACCATGCGCCACTTGTCCATTTCAATTGACGAAGACCTGCAACGCACTTTCTCCTTTTTCGAAAAGCTTCAAGCAAAGCCTGGTGGCTTAAACATCTTGGCTTCCCAAGATTCTGCTTTCTCTTCCTTAATCCAATCCTTCCCTCGTATGCTTCACTTATCCTTAGATAACCACTTAACACTCATACTGGATTCTCTCCTCAACTTTGGAATCCCCACATCTCGCATCTCACGCATAATACTGGCTTTCCCTCCTCTTCTCTTCTGGAATCTTCAAATCCTGCAAACTAGACTCCTCGCCGTCAAGCAGATTAACGTTGCTGATCAAGATTATGCCAAGTTTCTGCTAAAATATCCTTGGTTTCTGTCGACAAGTATTCAAGAAAATTATGCGGAGCTCCTTGCTTTTTCGTATTCTATCAAGGTTCCAAAGACACAGATAGACCGTGCAATTGAAAGCCACCCTCATTTATTGAGCTGTTCAACAAGCAAGCTCGAGTTGATGGTAGATCAGTTTGCTAAACTTGGAGTTCGGAAGAAAAAGTTAAGTCAGGTTATTACTAGAAGTCCTCAATTGCTACTACGGAAGCCCAAAGACTTTCTACAGATTGTTCTGTTGTTTGAAAATATGGATTTAGATAAAGAAACTATAGGAAGAATACTTGCCCGCTGCCCTGAAATTTTTGCTTCCAGCATTAATAAAACTTTACAAAGGAAGATTGAGTTCCTTGGTAGGGTTGGCATTTGTAAGGCTTTCCTACCTGGGGTTATCAGAAAGTATCCTGAATTACTTGTATCTGACATTGACAAAACTTTACTACTAAGGATAATATACTTGATGAAGTTAGGTCTTTCAGAAGAAGAGATAGCATTTATGGTACGCACATTTTCTCCTCTTCTTGGGTACAGTATAGAGGGGGTTCTTAAGCCAAAAATAGAATTCCTGGTGAACTCAATGGAGAGGCCAGTAAGAGATGTGGTGAGTTACCCTCGGTATTTTAGCTATTCACTAGAGAAGAAAATAAAGCCAAGATATTGGGTGTTGAAAAGAAGGGATATCAAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCCGCTGAGTTTATGGGTATTGGAGGGATGCCCGTCTCTCATCCCGTTTCTTCTAATGATAGCCTGTAA 1833 0.4277 MLVKIQTNWFVPVAVPFSVPHKLEGCFVMSKCVLSTHTPTLFEVDNDKARRRRRRSNWSCGCGSEEANVQRQDLSESESKRELEVQEARRAISSYLGELGVSEEESLSIAWNCPGYVKMLVEGVRDLDEWGWETDEEIEGLSFKDKILRVAAQKGDKGKIAYLETLGLTLSWSINVAGYLSAHTLPSLIHKVTRIKQLFFSPPDNDGDHHPSLLMRNILLTMRHLSISIDEDLQRTFSFFEKLQAKPGGLNILASQDSAFSSLIQSFPRMLHLSLDNHLTLILDSLLNFGIPTSRISRIILAFPPLLFWNLQILQTRLLAVKQINVADQDYAKFLLKYPWFLSTSIQENYAELLAFSYSIKVPKTQIDRAIESHPHLLSCSTSKLELMVDQFAKLGVRKKKLSQVITRSPQLLLRKPKDFLQIVLLFENMDLDKETIGRILARCPEIFASSINKTLQRKIEFLGRVGICKAFLPGVIRKYPELLVSDIDKTLLLRIIYLMKLGLSEEEIAFMVRTFSPLLGYSIEGVLKPKIEFLVNSMERPVRDVVSYPRYFSYSLEKKIKPRYWVLKRRDIKCSLKDMLGKNDEEFAAEFMGIGGMPVSHPVSSNDSL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00010 610 PANTHER CGI-12 PROTEIN-RELATED 249 396 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 Gene3D Transcription termination factor 3, mitochondrial 384 596 IPR038538 -
Vium4846g00010 610 FunFam Mitochondrial transcription termination factor family protein 383 596 - -
Vium4846g00010 610 SMART mt_12 474 505 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 297 327 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 368 398 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 510 542 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 332 363 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 543 574 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 403 433 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 438 469 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Vium4846g00010 610 Pfam mTERF 283 589 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00010 Vium-Chr4846 60280 66593 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4846g00010 mTERF 3.2e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00010 K15031 - gmx:100802127 858.981