Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00009 ATGTGGCTTCCACATCCTAAAGGATCAGGGATTAGAAAGGGAGTAGGAGGAGGAGGAGGAGGTAATGGAATAGTAGCAGTGGCTATAGACAAGGATAAAGGAAGCCATTACGCTCTTAAATGGGCTGTTGATTGTCTGCTTGGCAGAGGTCAGACTTTGATTCTCCTCCACGTTTTGCACGGGACATCCTCACATGTTTCCAGGGGTAGCGAGGCCCTTGTTTGTAACATCGCCAATTCATCTGCGTATCCACAGAGATACCAACTTGATACCACTACCAAGGATTTGTTGCTCACTTTCCACTGCTATTGTACACGCAAAGATATACACTGCCTTGATGTCCTACTTGAAGACAATGATGTTGTGAAAGCAATAACAGAATATGTCTCTTATGCTGCGATTGAAAACTTGGTGATTGGTGCAACATCCAGGCATGGGTTTATTCGATTTAAGTCATCATCATGTGCATCAACTAGCATATCAAAGGGGGCGCCGGACTTTTGTACCGTGTTCATCATTTCAAAGGGAAAAATCTCGTCAGTTCGGAATGCTACTCGTCCAGCCGCGCATACATCCCCACTTCTGATCCATATACGTAATCTAAAGAACAAGGACGAAAATCATCAAGAAATACCCTTCAGAAATACAAATACGAAAGACAGGACGCCATTCAAACCTCAGAGCTGGCACGATGAATCTATTCAGTCTCCATTTCCAAGAGGAAGAGGCACGAATAGATTGTCATGCGTGGACTTCCCAGACTCAGATACGGAAATATCATTTGTAAGCTCCGATAGGCCAAGCAGTTGTCGTTCGTCCTCCGTTTATGACTATATTGACGCAAGCCGAACTCCGCGGGCTTCTACCAGTTCAGATCATAGCTGTGGATCAACCCGATTGGGACTCAAGTTCAATGACCTCGGTTCACCCGATACCTCATTCTCTCACGAAAGCAGTAGAACATCATTCTCATATTCATCACAGAGCATGGATGAAGAAGCAGCAGAAGCTGATATGAAAAGGCTGAAGCTTGAGTTAAAGCAAACGATGGATATGTACAGTAAAGCATGCAGAGAAGCACTAACAGCCCAGCATAAGTTAATGGAGTTGACACACTGGAGAATTGAGGAAGAAAAAAAATTGGATGAGGCACGATTGGCTGAGGAAGCTGCGCTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCCATGGAAACTGCTGAAGCGTCGAAGAAAATTGCTGAGGTTGAAACACGCAAAAGAGCGACTGTTGAAGTTAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAGCTTTTGGACAATCTAGCCCAAACTGATGTAAGATATAGGAGATACTGTATAGAGGAGATTGAAGCAGCCACGAACTTCTTTTCTGAATCCCAGAAAATCGGAGAAGGAGGTTATGGCCCTGTTTTTAAATGTTTCCTTGATCACACTCCAGTTGCTGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGGTTGACATTCTGAGCTGCATGCGACACCCAAACATGGTGCTTCTTCTGGGAGCATGTCCGGAGTATGGCATATTGATATATGAATATATGGCTAATGGAAGCCTAGAAGATTGCCTGTTTCGAAAAAGGACGAACAAGGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAACGACGGGCCTTCTATTCCTGCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTGAAACCAGGCAACATTTTGCTAGACCAGAATTATGTGAGTAAGATAAGCGATGTTGGATTAGCAAGGCTTGTCCCAGCAGTTGCGGAAGACGTGACACAATGCTGCATGACATCAGCAGCTGGAACATTTTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGCGTGAAGTCGGATGTTTATTCTCTAGGAATAATTTTTCTTCAACTATTGACTGGCAGACCTCCAATGGGTTTAGCTCACCATGCCGGGCAGGCTATAGAGAAAGAAACCTTTGAGGAAATGCTGGACCCCTCTGTAACCGATTGGCCTCTTCAACAAGCCTTGTGCCTTGCAAACATAGCAGTCAAATGTGCGGAACTTAGACGAAAAGATAGGCCAGACCTTGCCAAAGTGGTGTTGCCAGAGCTCGACAAATTGAGAGACTTTGCAGAAGAAAACATTACACTGCGATTGTTTCCCATCAATTTAGGATGCACTGCGCCCTCTCCCTGCCACAGTGAAACTTCTGTGCAACAGGATGTGATAAGCGACCCGCGCCTTGTACATTCCGTAGGCTCATCAGCTCCATCAACTCCTACAGAAGAAAAACATTAA 2370 0.4502 MWLPHPKGSGIRKGVGGGGGGNGIVAVAIDKDKGSHYALKWAVDCLLGRGQTLILLHVLHGTSSHVSRGSEALVCNIANSSAYPQRYQLDTTTKDLLLTFHCYCTRKDIHCLDVLLEDNDVVKAITEYVSYAAIENLVIGATSRHGFIRFKSSSCASTSISKGAPDFCTVFIISKGKISSVRNATRPAAHTSPLLIHIRNLKNKDENHQEIPFRNTNTKDRTPFKPQSWHDESIQSPFPRGRGTNRLSCVDFPDSDTEISFVSSDRPSSCRSSSVYDYIDASRTPRASTSSDHSCGSTRLGLKFNDLGSPDTSFSHESSRTSFSYSSQSMDEEAAEADMKRLKLELKQTMDMYSKACREALTAQHKLMELTHWRIEEEKKLDEARLAEEAALAIAEKEKARCRAAMETAEASKKIAEVETRKRATVEVKALKEAEEMRKLLDNLAQTDVRYRRYCIEEIEAATNFFSESQKIGEGGYGPVFKCFLDHTPVAVKVLRPDAAQGKSQFQQEVDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFRKRTNKVLSWQLRFRIAAEITTGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPAVAEDVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRPPMGLAHHAGQAIEKETFEEMLDPSVTDWPLQQALCLANIAVKCAELRRKDRPDLAKVVLPELDKLRDFAEENITLRLFPINLGCTAPSPCHSETSVQQDVISDPRLVHSVGSSAPSTPTEEKH 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00009 789 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 438 538 - -
Vium4846g00009 789 CDD STK_N 24 176 - -
Vium4846g00009 789 MobiDBLite consensus disorder prediction 213 237 - -
Vium4846g00009 789 MobiDBLite consensus disorder prediction 769 789 - -
Vium4846g00009 789 Pfam Protein kinase domain 467 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4846g00009 789 Pfam Universal stress protein family 24 154 IPR006016 -
Vium4846g00009 789 SMART serkin_6 466 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4846g00009 789 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 153 - -
Vium4846g00009 789 SUPERFAMILY Protein kinase-like (PK-like) 450 724 IPR011009 -
Vium4846g00009 789 ProSiteProfiles Protein kinase domain profile. 466 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4846g00009 789 Coils Coil 332 359 - -
Vium4846g00009 789 Coils Coil 392 412 - -
Vium4846g00009 789 MobiDBLite consensus disorder prediction 311 330 - -
Vium4846g00009 789 Gene3D Phosphorylase Kinase; domain 1 444 538 - -
Vium4846g00009 789 Gene3D Transferase(Phosphotransferase) domain 1 539 742 - -
Vium4846g00009 789 PANTHER OS02G0152300 PROTEIN 25 755 - -
Vium4846g00009 789 MobiDBLite consensus disorder prediction 216 237 - -
Vium4846g00009 789 FunFam Os07g0541700 protein 539 631 - -
Vium4846g00009 789 Gene3D HUPs 24 173 IPR014729 -
Vium4846g00009 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00009 Vium-Chr4846 53833 58280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4846g00009 1 762 Receptor kinase-like Gene Family AT1G78940 56.833 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vium4846g00009 Pkinase 6.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00009 - - gmx:100801601 1179.08