Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00006 ATGAAATCACAGGCACAGTTTCCAGAAAAGATATCAGGGCAGGTACCTAATCAATCTGGGTCTCAGTTGCCTGGCCTGATTCAGCTGAATGGAAATGCCCTGCATCAGATGCCAAATTTAGGTGTTTTTCCAAATATGGACGCTGAATTTCTTAGAGCACGATCTCTTACGCTTGAAAGAATATGTAATAAATTACTGCTTAAGTACCAGCATCCTGTTACAGAAGCACATAAAAGGAAGGTTAAGGATCTTGCAAAACGTCTCGAGGAGGGCCTGTTAAAAGCTGCTATATCTAAGGAGGACTACATGAACTTAGACACACTAGACAGTCGCTTATCTAATTTCCTTAGAATGTCATCTATGACTACTAACCACCACCAACATCCTCAGCTTGTTAGCTCTTCTCCAATTGCTACAATGATACCAACACCTGGCATGTCACATATTACAAATTCCACCATGATCACGGCATCTTCTGTGGATACGTCAATGATTGCTGCCAGTGGATCTAACAGCATAGCATCCCCATCTGTCAATAGTGTAAACATGTTACCAGCAGGTGGCATGCTTGGCAGCACCTTAAATAGATCTGATGGTTTGTCTAATGGTTACAAGCACTCTGCTACAAGTTTTTCCATTGGTTCAGGAGGAAATATGTCATCCGTAGGGGTGCAAAGAGTTACTAGCCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATCATTCATATACAAATATGGATCCTTCAAGTAACAACAGTTCTTTTTCTGGTGTTGATTCTACATTACTATTGCCGTCACAGTCTCAGCCACAGCGGCACCAGAAGCTGCAAGATAGTGACCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATTGATGGTGGAAGGAGATCTGATTTACTGCAAAACACATTTGCATATCCAAATGGTTCTATCAATAGTGGGCTAGGTTTGATTGGAAACAGCATACAAATTGCAAATGAACTCGGGACTGAAGACTACACTTCAGCATACTCTAATTCCCCTAAGAACTTACAGCAGCTATTTGATCAAAATCAACAGCCAGTAGTGCAGGGTGACAAATATGGATTGATTAATGTTGACACTTTTAATTCTGGAAGCTTTTATGCATCTGCAACATCCTCTGGCTCTATGTTGAACACTCAGAACATGAATGCTGTAAAATTGCCCTCAATACCCATTTCCAGCTCACTCATAAGTGGTCATTCGAATTTGCCCAGTATGAATCATACTGCTCATCACAACTCTCAAGCAATAAGTTCATTCAAAAATTTAAAATTCCAGTCTTCCCTGACTCCAAGAAATGACCGTTTAAATACTCAACATCAATATGAGCAAAGAACCCAACAATGTCACCAGTCAGATTGGTATGCTCCACAGCAATTTCAGCTGAATCAGCAAAGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCCCTCAGTCTCAACTCTCTTCCGGTCTAGACAATAACATAAAGTCTGAGCCTGGTGTTGAACCACATAAAGAAATTCTCACTTCTCAGCTTTCTGAGCAGTTCCATACATCTGAAATGCACAACCATTTCCAACAGATTCCTTCTAAAGACTGCTCTAAGGTTGCTCAGCAGCAGGTTTCATTGGATCAACACAACTCATCCTCATCACCACCTCAAATTTCTCAACAAATGTTGCATCCTTATCAATTGGTTTCAGAGTCTCAAAATAATTTTAACTGTCTTTCAGTTGGCTCACAATCTAAATCCATACTTAAAAATCAGTGGCCTCGATCACAAGATGAAAACGATGTTCCTAAGGGTATGTTACATGAACAACATCTTCCCATTGATTTTCATCAAAGAATACCAAGGCAAGATGAAACCCAATGCTGTAATTTACCATTAGATGGATCTATTATTGGCCAAGCTGTTGCCTCTAAAGAGAATGAACACAGAAATCAACAAAAGTGGCTTTTATTTTTGTTTCATGCTCGATGCTGTTCTGCCCCAGAAGGGCAATGCCAAGAACGCCATTGTTCTATTATGCAGAAGTTATGTAATCATGTAGATAGATGCATTATATCTCATTGTCCATATCCTCGTTGTGGTCGTACCAGGAAATTGCTTCATCATTACATAAAATGCAGGAATCCACATTGCCCTGTTTGCATTTTAGTAAGGAAGTACAGACATGCATTTCAACTTAAGTCCCGAGTTCAGTCAGATATTGAACCATGTTTGCCAGTTGCTTTAAATGTATCCAGCGAAACCTTTAATTCAGTGGGCCTTTCATCTAGATTGATCTCCAAGTCTCAACTAGTGGTTGAAATTTCAGAAGACCTACCAGCTCCAAAGCGTATGAAAACTGAGCAATACACCCAGTCCACTAATCCTGAATATGATAGTGCTGCCTCATCTGCTCTTCCAAACTGTGAATTACGAGATTCAAAGGATACTCAATGCCAGTCCTACTCATGTGGGGATATGTCTGTATCAATTAAATCTGAGCTTAAAGAAGTTAAAGCAGAAGTTCTGGCGCATTCAATGCATGAAAATCTCAGCGAGACAAGAATGGAGGAGGATAATGCACATGACAAAAGGCCCACTGCTAAGCCTGTCACATACAATGAGCCTGCTAATATAGCTAGGCTGGAGAATATTAGAACTGAGAAAGAAAGTGGTCAAGATAAGCAAGAAAATGTGACACCATCTGAACCTGGAGCTGCAACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTGACAGAACTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAAAGAAGAATCAAGCCATGGAGCATTCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAATTAACTTTTGAACCACCCCCTATTTATTGCACAACATGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACTGGTGATACACGACACTATTTTTGTATACCATGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGAACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATATACATGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAGTGACCAAATAGAGCAACGATTATTTAGGAGACTAAAGCTTGAGAGACAAGAGAGGGCCCGACTTCAAGGGAAAAATTATGATGAGGTGCCTGGAGCTGAATCTCTTGTTATAAGGGTTGTGTCCTCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCGAAGGTAGTTTTGTTGTTTCAGAAGATTGAAGGGGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCAAATCAGCGCCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACTGGAGAAGCTCTTCGAACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTCACTAGCTGCTACATTTGGGCTTGTCCGCCACTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGACCATTTCTTTGTATCTTCTGGTGAATGTAGGGCGAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTATTGGCCTGGGGCAGCCGAGGATTTGATTCATCAGCTTCGTCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACCACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCACAAAGGATCTTCTCCTTATGCACAAACTTGGCGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTCTGATGGTGTCAGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTAAAGCGTGAAGAAAGAGAGCGGCATCCTATTAACCAGAGGGAGAAACACATCCTTTATCCTGTGGAAATTATTGATGTACCTGCCGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAGTTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGTCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTAACATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATATGATGTGTGCAATGCTTGCTATCAAAAGGATGGTGGCACTGATCATCCTCATAAATTGACAAATCATCCATCAATAGCAGATCGTGATGCTCAGAACAAGGAAGCTAGGCAACAACGAGTATTACAGTTACGAAGAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAATTGTCGGAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCCGGAGGTTGCGTTCTATGTAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCCTGCAAAGAATCTGAATGTCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCAGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATTCTGGATGA 5148 0.4095 MKSQAQFPEKISGQVPNQSGSQLPGLIQLNGNALHQMPNLGVFPNMDAEFLRARSLTLERICNKLLLKYQHPVTEAHKRKVKDLAKRLEEGLLKAAISKEDYMNLDTLDSRLSNFLRMSSMTTNHHQHPQLVSSSPIATMIPTPGMSHITNSTMITASSVDTSMIAASGSNSIASPSVNSVNMLPAGGMLGSTLNRSDGLSNGYKHSATSFSIGSGGNMSSVGVQRVTSQMIPTPGFSVSNNHSYTNMDPSSNNSSFSGVDSTLLLPSQSQPQRHQKLQDSDHNNHALHNLGSQIDGGRRSDLLQNTFAYPNGSINSGLGLIGNSIQIANELGTEDYTSAYSNSPKNLQQLFDQNQQPVVQGDKYGLINVDTFNSGSFYASATSSGSMLNTQNMNAVKLPSIPISSSLISGHSNLPSMNHTAHHNSQAISSFKNLKFQSSLTPRNDRLNTQHQYEQRTQQCHQSDWYAPQQFQLNQQSQQPQHLVNNDAFPQSQLSSGLDNNIKSEPGVEPHKEILTSQLSEQFHTSEMHNHFQQIPSKDCSKVAQQQVSLDQHNSSSSPPQISQQMLHPYQLVSESQNNFNCLSVGSQSKSILKNQWPRSQDENDVPKGMLHEQHLPIDFHQRIPRQDETQCCNLPLDGSIIGQAVASKENEHRNQQKWLLFLFHARCCSAPEGQCQERHCSIMQKLCNHVDRCIISHCPYPRCGRTRKLLHHYIKCRNPHCPVCILVRKYRHAFQLKSRVQSDIEPCLPVALNVSSETFNSVGLSSRLISKSQLVVEISEDLPAPKRMKTEQYTQSTNPEYDSAASSALPNCELRDSKDTQCQSYSCGDMSVSIKSELKEVKAEVLAHSMHENLSETRMEEDNAHDKRPTAKPVTYNEPANIARLENIRTEKESGQDKQENVTPSEPGAATKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAKKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILSDQIEQRLFRRLKLERQERARLQGKNYDEVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIHQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHILYPVEIIDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHPHKLTNHPSIADRDAQNKEARQQRVLQLRRMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00006 1715 FunFam Histone acetyltransferase HAC1 1536 1587 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 238 286 - -
Vium4846g00006 1715 ProSiteProfiles Zinc finger TAZ-type profile. 1597 1680 IPR000197 -
Vium4846g00006 1715 CDD PHD_HAC_like 1009 1081 - -
Vium4846g00006 1715 ProSitePatterns Zinc finger PHD-type signature. 1010 1081 IPR019786 -
Vium4846g00006 1715 ProSiteProfiles Zinc finger TAZ-type profile. 650 729 IPR000197 -
Vium4846g00006 1715 ProSiteProfiles Zinc finger ZZ-type profile. 1537 1590 IPR000433 GO:0008270
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 238 275 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 854 874 - -
Vium4846g00006 1715 Pfam PHD-finger 1040 1082 IPR019787 -
Vium4846g00006 1715 SUPERFAMILY TAZ domain 1599 1682 IPR035898 -
Vium4846g00006 1715 Gene3D - 1413 1470 IPR043145 -
Vium4846g00006 1715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1034 1082 IPR013083 -
Vium4846g00006 1715 SMART zz_5 1416 1460 IPR000433 GO:0008270
Vium4846g00006 1715 SMART zz_5 1536 1582 IPR000433 GO:0008270
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 854 918 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 887 901 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 489 508 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 489 503 - -
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 1 23 - -
Vium4846g00006 1715 ProSiteProfiles Zinc finger ZZ-type profile. 1417 1480 IPR000433 GO:0008270
Vium4846g00006 1715 SUPERFAMILY RING/U-box 1397 1477 - -
Vium4846g00006 1715 SUPERFAMILY RING/U-box 1518 1585 - -
Vium4846g00006 1715 Gene3D - 1536 1587 IPR043145 -
Vium4846g00006 1715 Pfam Histone acetylation protein 1139 1361 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00006 1715 FunFam Histone acetyltransferase HAC1-like protein 1594 1711 - -
Vium4846g00006 1715 SUPERFAMILY FYVE/PHD zinc finger 1043 1083 IPR011011 -
Vium4846g00006 1715 PANTHER CBP/P300-RELATED 80 1706 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00006 1715 Pfam Zinc finger, ZZ type 1539 1580 IPR000433 GO:0008270
Vium4846g00006 1715 ProSitePatterns Zinc finger ZZ-type signature. 1542 1569 IPR000433 GO:0008270
Vium4846g00006 1715 SMART KAT11_2 1132 1429 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 1357 1387 - -
Vium4846g00006 1715 SMART TAZ_2 1600 1678 IPR000197 -
Vium4846g00006 1715 SMART TAZ_2 651 729 IPR000197 -
Vium4846g00006 1715 SUPERFAMILY TAZ domain 649 732 IPR035898 -
Vium4846g00006 1715 FunFam Histone acetyltransferase of the CBP family 12 1413 1472 - -
Vium4846g00006 1715 Pfam TAZ zinc finger 1607 1677 IPR000197 -
Vium4846g00006 1715 Pfam TAZ zinc finger 658 726 IPR000197 -
Vium4846g00006 1715 Gene3D TAZ domain 1594 1711 IPR035898 -
Vium4846g00006 1715 Gene3D TAZ domain 644 734 IPR035898 -
Vium4846g00006 1715 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1099 1535 IPR031162 GO:0004402
Vium4846g00006 1715 MobiDBLite consensus disorder prediction 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00006 Vium-Chr4846 12288 26828 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium4846g00006 HAT_KAT11 9.7e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00006 K04498 - gmx:100800511 2843.91