Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4846g00004 ATGAAATCACAGGCACAGTTTCCAGAAAAGATATCAGGGCAGGTACCTAATCAATCTGGGTCTCAGTTGCCTGGCCTGATTCAGCTGAATGGAAATGCCCTGCATCAGATGCCAAATTTAGGTGTTTTTCCAAATATGGACGCTGAATTTCTTAGAGCACGATCTCTTACGCTTGAAAGAATATGTAATAAATTACTGCTTAAGTACCAGCATCCTGTTACAGAAGCACATAAAAGGAAGGTTAAGGATCTTGCAAAACGTCTCGAGGAGGGCCTGTTAAAAGCTGCTATATCTAAGGAGGACTACATGAACTTAGACACACTAGACAGTCGCTTATCTAATTTCCTTAGAATGTCATCTATGACTACTAACCACCACCAACATCCTCAGCTTGTTAGCTCTTCTCCAATTGCTACAATGATACCAACACCTGGCATGTCACATATTACAAATTCCACCATGATCACGGCATCTTCTGTGGATACGTCAATGATTGCTGCCAGTGGATCTAACAGCATAGCATCCCCATCTGTCAATAGTGTAAACATGTTACCAGCAGGTGGCATGCTTGGCAGCACCTTAAATAGATCTGATGGAGGAAATATGTCATCCGTAGGGGTGCAAAGAGTTACTAGCCAGATGATTCCAACTCCAGGATTTAGTGTCAGCAATAATCATTCATATACAAATATGGATCCTTCAAGTAACAACAGTTCTTTTTCTGGTGTTGATTCTACATTACTATTGCCGTCACAGTCTCAGCCACAGCGGCACCAGAAGCTGCAAGATAGTGACCACAACAATCATGCATTGCACAACCTTGGCAGTCAAATTGATGGTGGAAGGAGATCTGATTTACTGCAAAACACATTTGCATATCCAAATGGTTCTATCAATAGTGGGCTAGGTTTGATTGGAAACAGCATACAAATTGCAAATGAACTCGGGACTGAAGACTACACTTCAGCATACTCTAATTCCCCTAAGAACTTACAGCAGCTATTTGATCAAAATCAACAGCCAGTAGTGCAGGGTGACAAATATGGATTGATTAATGTTGACACTTTTAATTCTGGAAGCTTTTATGCATCTGCAACATCCTCTGGCTCTATGTTGAACACTCAGAACATGAATGCTGTAAAATTGCCCTCAATACCCATTTCCAGCTCACTCATAAGTGGTCATTCGAATTTGCCCAGTATGAATCATACTGCTCATCACAACTCTCAAGCAATAAGTTCATTCAAAAATTTAAAATTCCAGTCTTCCCTGACTCCAAGAAATGACCGTTTAAATACTCAACATCAATATGAGCAAAGAACCCAACAATGTCACCAGTCAGATTGGTATGCTCCACAGCAATTTCAGCTGAATCAGCAAAGTCAGCAACCTCAGCATTTGGTCAACAATGATGCCTTCCCTCAGTCTCAACTCTCTTCCGGTCTAGACAATAACATAAAGTCTGAGCCTGGTGTTGAACCACATAAAGAAATTCTCACTTCTCAGCTTTCTGAGCAGTTCCATACATCTGAAATGCACAACCATTTCCAACAGATTCCTTCTAAAGACTGCTCTAAGGTTGCTCAGCAGCAGGTTTCATTGGATCAACACAACTCATCCTCATCACCACCTCAAATTTCTCAACAAATGTTGCATCCTTATCAATTGGTTTCAGAGTCTCAAAATAATTTTAACTGTCTTTCAGTTGGCTCACAATCTAAATCCATACTTAAAAATCAGTGGCCTCGATCACAAGATGAAAACGATGTTCCTAAGGGTATGTTACATGAACAACATCTTCCCATTGATTTTCATCAAAGAATACCAAGGCAAGATGAAACCCAATGCTGTAATTTACCATTAGATGGATCTATTATTGGCCAAGCTGTTGCCTCTAAAGAGAATGAACACAGAAATCAACAAAAGTGGCTTTTATTTTTGTTTCATGCTCGATGCTGTTCTGCCCCAGAAGGGCAATGCCAAGAACGCCATTGTTCTATTATGCAGAAGTTATGTAATCATGTAGATAGATGCATTATATCTCATTGTCCATATCCTCGTTGTGGTCGTACCAGGAAATTGCTTCATCATTACATAAAATGCAGGAATCCACATTGCCCTGTTTGCATTTTAGTAAGGAAGTACAGACATGCATTTCAACTTAAGTCCCGAGTTCAGTCAGATATTGAACCATGTTTGCCAGTTGCTTTAAATGTATCCAGCGAAACCTTTAATTCAGTGGGCCTTTCATCTAGATTGATCTCCAAGTCTCAACTAGTGGTTGAAATTTCAGAAGACCTACCAGCTCCAAAGCGTATGAAAACTGAGCAATACACCCAGTCCACTAATCCTGAATATGATAGTGCTGCCTCATCTGCTCTTCCAAACTGTGAATTACGAGATTCAAAGGATACTCAATGCCAGTCCTACTCATGTGGGGATATGTCTGTATCAATTAAATCTGAGCTTAAAGAAGTTAAAGCAGAAGTTCTGGCGCATTCAATGCATGAAAATCTCAGCGAGACAAGAATGGAGGAGGATAATGCACATGACAAAAGGCCCACTGCTAAGCCTGTCACATACAATGAGCCTGCTAATATAGCTAGGCTGGAGAATATTAGAACTGAGAAAGAAAGTGGTCAAGATAAGCAAGAAAATGTGACACCATCTGAACCTGGAGCTGCAACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTGACAGAACTGTTTACTCCTGAGCAAGTCAGGGAACATATCACTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAGGCAAAGAAGAATCAAGCCATGGAGCATTCAATGAGTGAGAACTCCTGTCAGTTGTGTGCAGTAGAGAAATTAACTTTTGAACCACCCCCTATTTATTGCACAACATGTGGTGTTCGGATTAAACGCAATAATATGTATTATACAATGGGTACTGGTGATACACGACACTATTTTTGTATACCATGCTACAATGAGCCTCGTGGAGACACCATTGTTGTTGATGGAACTTCTTTTCCTAAGTCAAGGTTAGAAAAGAAGAAAAATGATGAGGAAACAGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATATACATGCCCTAACTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAATGCTGTTCTTGGAGCCAAGGATTTACCCAGAACAATTCTCAGTGACCAAATAGAGCAACGATTATTTAGGAGACTAAAGCTTGAGAGACAAGAGAGGGCCCGACTTCAAGGGAAAAATTATGATGAGGTGCCTGGAGCTGAATCTCTTGTTATAAGGGTTGTGTCCTCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCGAAGGTAGTTTTGTTGTTTCAGAAGATTGAAGGGGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAAAGTAAATTTCCAAATCAGCGCCGGGTTTATCTTTCATATCTGGACTCTGTTAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACTGGAGAAGCTCTTCGAACATTTGTTTATCATGAAATTCTGATTGGATACCTTGAGTATTGCAAGAAACGTGGTTTCACTAGCTGCTACATTTGGGCTTGTCCGCCACTAAAGGGTGAAGATTATATTTTATATTGTCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTTGCTATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTTGATCTCACCAACTTGTACGACCATTTCTTTGTATCTTCTGGTGAATGTAGGGCGAAGGTTACAGCTGCAAGGCTCCCATATTTTGATGGTGACTATTGGCCTGGGGCAGCCGAGGATTTGATTCATCAGCTTCGTCAAGAGGAAGATGGAAGAAAACAAAATAAGAAAGGAACCACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAATGCCACAAAGGATCTTCTCCTTATGCACAAACTTGGCGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTCTGATGGTGTCAGGCAACCGTTGGGTTTGCAGGCAATGCAAGAATTTTCAGATTTGTGACAAGTGTTATGAAGCAGAACTAAAGCGTGAAGAAAGAGAGCGGCATCCTATTAACCAGAGGGAGAAACACATCCTTTATCCTGTGGAAATTATTGATGTACCTGCCGATACAAAGGACAAAGATGAGATTCTTGAGAGTGAGTTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGTCAGGGAAATCATTATCAGTATGATACTCTAAGGCGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACTACATGTAACATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCGTTGTGAAGTCTGCCCTGAATATGATGTGTGCAATGCTTGCTATCAAAAGGATGGTGGCACTGATCATCCTCATAAATTGACAAATCATCCATCAATAGCAGATCGTGATGCTCAGAACAAGGAAGCTAGGCAACAACGAGTATTACAGTTACGAAGAATGCTTGATCTTCTTGTGCATGCATCTCAATGTCGTTCTGCCCATTGCCAATATCCAAATTGTCGGAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCCGGAGGTTGCGTTCTATGTAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCCTGCAAAGAATCTGAATGTCATGTACCACGTTGCAGAGATTTAAAAGAACACTTGAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCAGCTGTAATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATTCTGGATGA 5097 0.4097 MKSQAQFPEKISGQVPNQSGSQLPGLIQLNGNALHQMPNLGVFPNMDAEFLRARSLTLERICNKLLLKYQHPVTEAHKRKVKDLAKRLEEGLLKAAISKEDYMNLDTLDSRLSNFLRMSSMTTNHHQHPQLVSSSPIATMIPTPGMSHITNSTMITASSVDTSMIAASGSNSIASPSVNSVNMLPAGGMLGSTLNRSDGGNMSSVGVQRVTSQMIPTPGFSVSNNHSYTNMDPSSNNSSFSGVDSTLLLPSQSQPQRHQKLQDSDHNNHALHNLGSQIDGGRRSDLLQNTFAYPNGSINSGLGLIGNSIQIANELGTEDYTSAYSNSPKNLQQLFDQNQQPVVQGDKYGLINVDTFNSGSFYASATSSGSMLNTQNMNAVKLPSIPISSSLISGHSNLPSMNHTAHHNSQAISSFKNLKFQSSLTPRNDRLNTQHQYEQRTQQCHQSDWYAPQQFQLNQQSQQPQHLVNNDAFPQSQLSSGLDNNIKSEPGVEPHKEILTSQLSEQFHTSEMHNHFQQIPSKDCSKVAQQQVSLDQHNSSSSPPQISQQMLHPYQLVSESQNNFNCLSVGSQSKSILKNQWPRSQDENDVPKGMLHEQHLPIDFHQRIPRQDETQCCNLPLDGSIIGQAVASKENEHRNQQKWLLFLFHARCCSAPEGQCQERHCSIMQKLCNHVDRCIISHCPYPRCGRTRKLLHHYIKCRNPHCPVCILVRKYRHAFQLKSRVQSDIEPCLPVALNVSSETFNSVGLSSRLISKSQLVVEISEDLPAPKRMKTEQYTQSTNPEYDSAASSALPNCELRDSKDTQCQSYSCGDMSVSIKSELKEVKAEVLAHSMHENLSETRMEEDNAHDKRPTAKPVTYNEPANIARLENIRTEKESGQDKQENVTPSEPGAATKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAKKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTSFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQNAVLGAKDLPRTILSDQIEQRLFRRLKLERQERARLQGKNYDEVPGAESLVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESKFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENIVVDLTNLYDHFFVSSGECRAKVTAARLPYFDGDYWPGAAEDLIHQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNATKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCRQCKNFQICDKCYEAELKREERERHPINQREKHILYPVEIIDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICRLDIETGQGWRCEVCPEYDVCNACYQKDGGTDHPHKLTNHPSIADRDAQNKEARQQRVLQLRRMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4846g00004 1698 Gene3D TAZ domain 1577 1694 IPR035898 -
Vium4846g00004 1698 Gene3D - 1519 1570 IPR043145 -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 221 281 - -
Vium4846g00004 1698 Pfam TAZ zinc finger 1590 1660 IPR000197 -
Vium4846g00004 1698 Pfam TAZ zinc finger 641 709 IPR000197 -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 472 486 - -
Vium4846g00004 1698 Pfam PHD-finger 1023 1065 IPR019787 -
Vium4846g00004 1698 SUPERFAMILY TAZ domain 632 715 IPR035898 -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 472 491 - -
Vium4846g00004 1698 Pfam Histone acetylation protein 1122 1344 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00004 1698 ProSiteProfiles Zinc finger TAZ-type profile. 1580 1663 IPR000197 -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 512 547 - -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 1340 1370 - -
Vium4846g00004 1698 SUPERFAMILY RING/U-box 1380 1460 - -
Vium4846g00004 1698 FunFam Histone acetyltransferase HAC1-like protein 1577 1694 - -
Vium4846g00004 1698 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1082 1518 IPR031162 GO:0004402
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 1 23 - -
Vium4846g00004 1698 Pfam Zinc finger, ZZ type 1522 1563 IPR000433 GO:0008270
Vium4846g00004 1698 Gene3D TAZ domain 627 717 IPR035898 -
Vium4846g00004 1698 SUPERFAMILY FYVE/PHD zinc finger 1026 1066 IPR011011 -
Vium4846g00004 1698 SUPERFAMILY TAZ domain 1582 1665 IPR035898 -
Vium4846g00004 1698 CDD PHD_HAC_like 992 1064 - -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 870 884 - -
Vium4846g00004 1698 ProSiteProfiles Zinc finger ZZ-type profile. 1520 1573 IPR000433 GO:0008270
Vium4846g00004 1698 SUPERFAMILY RING/U-box 1501 1568 - -
Vium4846g00004 1698 SMART KAT11_2 1115 1412 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00004 1698 ProSitePatterns Zinc finger ZZ-type signature. 1525 1552 IPR000433 GO:0008270
Vium4846g00004 1698 ProSiteProfiles Zinc finger TAZ-type profile. 633 712 IPR000197 -
Vium4846g00004 1698 SMART zz_5 1399 1443 IPR000433 GO:0008270
Vium4846g00004 1698 SMART zz_5 1519 1565 IPR000433 GO:0008270
Vium4846g00004 1698 FunFam Histone acetyltransferase of the CBP family 12 1396 1455 - -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 837 901 - -
Vium4846g00004 1698 FunFam Histone acetyltransferase HAC1 1519 1570 - -
Vium4846g00004 1698 PANTHER CBP/P300-RELATED 80 1689 IPR013178 GO:0004402|GO:0006355|GO:0016573
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 837 857 - -
Vium4846g00004 1698 ProSiteProfiles Zinc finger ZZ-type profile. 1400 1463 IPR000433 GO:0008270
Vium4846g00004 1698 SMART TAZ_2 634 712 IPR000197 -
Vium4846g00004 1698 SMART TAZ_2 1583 1661 IPR000197 -
Vium4846g00004 1698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1017 1065 IPR013083 -
Vium4846g00004 1698 Gene3D - 1396 1453 IPR043145 -
Vium4846g00004 1698 MobiDBLite consensus disorder prediction 221 258 - -
Vium4846g00004 1698 ProSitePatterns Zinc finger PHD-type signature. 993 1064 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4846g00004 Vium-Chr4846 12155 26828 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Vium4846g00004 HAT_KAT11 9.6e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4846g00004 K04498 - gmx:100800511 2854.7