LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4844g00005	ATGGAAGAGCCTCAGTATCGGGAGCATCCAAAAACCAAAATCGCAGCCATTCCGCCGCCGCAGCACTCCGATGGGGCCTCGGCAGAGTTGCGCGGAGTGGATTGCAACCTCGCTTCCCTCTGCGAGCATGTCCAAATCGAAGGCTTCAATTCGGGTTCTTTTTCCGACATCGTCGTCAATGCAATGGGTTCCACTTATCACCTTCATCGGCTTATCCTTTCGCGCAGTTCCTATTTCAGGAACATGCTTCACGGGCCTTGGAAAGAAGCCAGTGCTCCTGTTGTGACTCTGCATGTTGATGATAAAAATGTTAATGATGAGGCAATTGCAATGGCTTTGGCGTACCTATACGGCCACCACCCTAAGCTTAATGATAATAATGCATTTCGTGTTCTTGCTGCTGCATCCTTTCTCGACCTTCAGGATTTGTGTGGAATTTGTACAGATTTCATTATATCTGAGCTGTGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGACTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGCTGGGGTTACCTTTGTCAAAGTGGTGGCATGGAATTGAAAGAGGTGCTTCCTAAACTTTCATCGCAAACATTACATGCATTATTGACTTCTAATGATCTATGGATACCCAATGAAGAGAAACGGTTTGAATTGGCTTTGCACACATTCCTGGCAAATCGTGCTCATTGCAAGGTTGAACATCCTTCGCATGGAATTTCTGGTTCTGAGTCTGCTACTGGTATTCATGCTGATTCTATTAACAGCAAGGGAAAAAGTATAATTGATGGCTGCACTACTAAGAGGTTGGAAACTGACCTTGGGAAAATGAATCTTAATAGTGATCTAAAGGACCCAAGCACTTCAAGTGTTCTAGTTGAGCTTGCAGATCCAGTGGCAGACTTCAATGATGGTGTTTCTGTTTCCGATGAACAGGTTCAACAAGCTTCATATGTCCGTACACCAAACCTGAATCCAAGATATTCTGGTGACATGGAAGGACCAACATTGGGTAATTCGATGCCTGATAAAGATGTGATGAGAACATCATGCTATGTGAACATGCCTCTTGGTACTGAAGCTACTGCTATGGCAGCCCCTGGAGTGGTCATTGAAGGGCCGTCGGAAGAAGGAACTTGCTACCAGTTGGAGGACAATAGTTGGTTTGTTAGGGACCCATCAAGACATTGTTTTTCATCAAATTCTTGTAATGAGCTCACGTCCAGTGATTGGGGAAGATATGGAACACCATTGTTTTCATGGAATGGCCAAGTTGTTGGCAGAAGACAGCTTAAAGCTCACCCCAGAGCAAACTACAGAGATCACGGAGATGAATATGATGCATTTTTCAATATATTTGAAGGGGGGTCCCTTTTATATTGCAATATGTCTTTTGATGCGCTTCTAAATGTCAGAAAGCAACTTGAAGAATTAGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTTCAGATGCTTCTTAGTCAGAGAGTACAGGAAATTGCCGCTGATACCTGCAAAGTTTGCTCCCTCATGAATTGTACTTGTCAGAAGCAATCTGCATTTTCACATGGAGCTTCTACATCTGGATCTTACTTGCAAGAACATAATCAGAACATTATGCCTGGCAGTGTGGGAAATATATATGTTGCTGAATCCTCTGCAGGTGAAAGAAGTGGCCTTTTTAGACCTGTACGAGTGCATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTAATTTTGTTCCGGCATCTGCTTCACATCCTACACGTTTCGTCTTTTCTCGTGTACCATTAGGTGTTGGAAACAGAAACCATCCTCAGTCTGCAGCCAATGATGATTCAGATACACGTGCTGACCCAAATGGAGACCTGTCTGGTGATGGATTGACAGCTGTAGTTGGGTTAAGCCTTGGAGGGAGTAATGGAACAAATGTACATACAGAGCTAACACAAAGGGGATATGAAATGGGCATGCAAAGCAGCATGTCTGGAAGTAATGCTGGAGATGCAAGTACTGGTGGTATCCCCATGCAGATGTTAGAGACACCAGAACATACCATTGGTATAGAATGGGACAATGTCAACAGTGCTTCCATATCACTGGATATGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTACGTTTTGAGGATGTGCATAGGCTTGGTGATGGTCAGGTCAAGCATTCTACAGAAGTTTTCTACGCTGGTTCTTTGTGGAAGGTCAGTGTACAAGCTTTTAATGATGAAGACCCCCAGGGACGGCGAACCCTTGGGCTGTTTCTTCATCGTCGAAAAGCAGAGATAACCGATATACATAGAAAGGTGCACATGTATGTTGACTCACGTGAAAAGGTGACTGCACGCTACCAGTTGTCTGTCCCATCCAAGAGGGAAATGATGGTGTTTGGAAGCTTTAAACAAACAGGCACACTTCTACCTAAATATCCCAAGGGATGGGGTTGGCGAACTGCTCTGCTATTTGATGAGCTTGCCGATCTTCTCCAAAACGGTGCCCTAAGGGTAATTGCTGTAGTGCAGCTTGTATGA	2601	0.446	MEEPQYREHPKTKIAAIPPPQHSDGASAELRGVDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPVVTLHVDDKNVNDEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCGICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELKEVLPKLSSQTLHALLTSNDLWIPNEEKRFELALHTFLANRAHCKVEHPSHGISGSESATGIHADSINSKGKSIIDGCTTKRLETDLGKMNLNSDLKDPSTSSVLVELADPVADFNDGVSVSDEQVQQASYVRTPNLNPRYSGDMEGPTLGNSMPDKDVMRTSCYVNMPLGTEATAMAAPGVVIEGPSEEGTCYQLEDNSWFVRDPSRHCFSSNSCNELTSSDWGRYGTPLFSWNGQVVGRRQLKAHPRANYRDHGDEYDAFFNIFEGGSLLYCNMSFDALLNVRKQLEELGFPCKAVNDGLWLQMLLSQRVQEIAADTCKVCSLMNCTCQKQSAFSHGASTSGSYLQEHNQNIMPGSVGNIYVAESSAGERSGLFRPVRVHVRGAIDGLAGIGRGTNFVPASASHPTRFVFSRVPLGVGNRNHPQSAANDDSDTRADPNGDLSGDGLTAVVGLSLGGSNGTNVHTELTQRGYEMGMQSSMSGSNAGDASTGGIPMQMLETPEHTIGIEWDNVNSASISLDMKTPLSHFPPFRFGVRFEDVHRLGDGQVKHSTEVFYAGSLWKVSVQAFNDEDPQGRRTLGLFLHRRKAEITDIHRKVHMYVDSREKVTARYQLSVPSKREMMVFGSFKQTGTLLPKYPKGWGWRTALLFDELADLLQNGALRVIAVVQLV	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4844g00005	866	SMART	BTB_4	55	155	IPR000210	GO:0005515
	Vium4844g00005	866	Gene3D	Potassium Channel Kv1.1; Chain A	29	188	IPR011333	-
	Vium4844g00005	866	PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN	16	866	-	-
	Vium4844g00005	866	MobiDBLite	consensus disorder prediction	611	640	-	-
	Vium4844g00005	866	SUPERFAMILY	POZ domain	49	153	IPR011333	-
	Vium4844g00005	866	ProSiteProfiles	BTB domain profile.	55	125	IPR000210	GO:0005515
	Vium4844g00005	866	Pfam	BTB/POZ domain	49	153	IPR000210	GO:0005515
	Vium4844g00005	866	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vium4844g00005	866	MobiDBLite	consensus disorder prediction	330	351	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Vium4844g00005		BTB	9.2e-14	CL0033

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4844g00005	-		-	gmx:100806711	1607.04