Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4840g00001 ATGGAGGGGAGAGATGAGGATGTGAGGGTAGGAGCCAACAGGTATGGAGAGAGGCAACCAATAGGAACAGGTGCACAGACACAAGATGGCAAAGACTACAGAGAGACTCCTCCAGCTCCATTGTTTGAGCCTAGAGAGTTAACATCATGGTCTTTCTATAGAGCAGGGATAGCAGAATTTGTGGCCACATTCTTGTTTCTTTATGTCACTGTTTTGACTGTGATGGGTGTGGCAAAATCTGCCAACAAATGCTCCACAGTTGGTGTCCAAGGCATTGCTTGGTCATTTGGTGGAATGATCTTTGCCCTTGTCTACTGTACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGTTGTTCTTGGCTCGCAAGTTATCTCTCACTAGGACAGTATTCTACATGATAATGCAGTGCTTAGGAGCTATCTGTGGTGCTGCTGTGGTCAAGGGATTCCAATCAAATCAATACGAGAGGCTTGGTGGTGGTGCCAACACTCTGAGTAAAGGATACTCCAAAGGTGATGGTCTTGGAGCAGAAATTGTAGGCACGTTTATTCTGGTTTACACTGTTTTCTCAGCCACAGATGCAAAACGAAATGTTAGAGACTCGCATGTTCCTATTTTAGCACCTTTGCCTATTGGTTTTGCCGTCTTTCTGGTGCACTTGGCTACAATTCCTATCACAGGGACTGGCATCAACCCTGCTAGAAGTTTAGGTGCAGCTCTTATATACAACAAAGACCAAGCTTGGGATAATCACTGGATCTTCTGGGTTGGGCCTTTTGTTGGGGCAGCACTTGCAGCTTTATACCATCAGATAGTGCTCAGAGCCATTCCTTTTAAATCAAATTGA 864 0.4549 MEGRDEDVRVGANRYGERQPIGTGAQTQDGKDYRETPPAPLFEPRELTSWSFYRAGIAEFVATFLFLYVTVLTVMGVAKSANKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRTVFYMIMQCLGAICGAAVVKGFQSNQYERLGGGANTLSKGYSKGDGLGAEIVGTFILVYTVFSATDAKRNVRDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDNHWIFWVGPFVGAALAALYHQIVLRAIPFKSN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4840g00001 287 ProSitePatterns MIP family signature. 114 122 IPR022357 -
Vium4840g00001 287 Gene3D Glycerol uptake facilitator protein. 39 286 IPR023271 -
Vium4840g00001 287 Coils Coil 285 287 - -
Vium4840g00001 287 MobiDBLite consensus disorder prediction 1 33 - -
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 133 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 96 120 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 182 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PRINTS Major intrinsic protein family signature 258 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 283 IPR034294 -
Vium4840g00001 287 Pfam Major intrinsic protein 46 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 CDD MIP 54 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 NCBIfam MIP family channel protein 58 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium4840g00001 287 FunFam Probable aquaporin PIP1-2 39 287 - -
Vium4840g00001 287 SUPERFAMILY Aquaporin-like 45 279 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4840g00001 Vium-Chr4840 6894 8400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4840g00001 1 287 Major Intrinsic Protein MIP AT3G61430 81.185 3.42e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4840g00001 K09872 - gmx:100809467 567.77