Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00038 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCCAGCTCAAACCCTAATAATAACAATCCTAATCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTGGCTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCATATGTGAAATTTGCAGCAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTCCACAGACGCGGCCACAACCTCCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAAGTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGATCCCTCTAGAGCCTTGGGAGACTTGACTGGCATAAAGAAACACTATAGCAGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGATAGCTTCATAACGCATAGAGCCTTTTGCGACGCTTTGGCTGAAGAAAGTGTGAGGATAACAACAGTTCCGGCGGCCTTAAGCAACTTGAGAAATGATCATCATTTGACCAATGCTCAAGCTTCGAGGATCCCTCAGATTTTTTCAGGGTTTCACTCAGATCAATTCGGTGGTTCAGGAACATCAGAGTCATTGGTGAATTATGCTGAGGCAAACCATCATCATCATCAACAACAACAGCAGCTGCAGCAAAAGCTAAGGTTACCACTCTGGCTAGATCACCAGGCGAATTCACAAGTACTTCACCACCCCCTTATTAACTTCCCAACCAAACCAAGTGATTTCAGTTCTTCGGGGCTAAACCCCGTGCCTGATGTGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTACCCAGAAGCGTCATTTGGAGGTGCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAGGAACAAGAAGAAAACAAAGGAGAGTTGTCGCATAGCGCAAGCTCCAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACAGTGTTGCAGAAAACTGTTCAAATGGGATCTACTAGGGTGAACGACAACGCGTTTTGCTCCACGGGCAGAAATAGGAACGGCAACCACAACAATGTTGTCAACAACGTTGTTGTTGAGGTTCAGAAGCTGGACGACTTGGTGAGTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGTGGGTATTTATTGAATGGTGACTCAAACAACTCGTTTGTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATGAAGAGACAACAGCAGCATCAATTATGGGAAAACAATTACACTCCATAAGCTCACACAGCAAAAATCAACTCGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAACAACATTAAATTTAATGCAATGGGGTCAGGCTCAGGCATGAACCTGCAGAGACAGTGCGGTGGACACTATGTCTAG 1590 0.4686 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNNPNPSSNPAKRRRSLPGTPDPDAEVVALSPKSLMATNRFICEICSKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRITTVPAALSNLRNDHHLTNAQASRIPQIFSGFHSDQFGGSGTSESLVNYAEANHHHHQQQQQLQQKLRLPLWLDHQANSQVLHHPLINFPTKPSDFSSSGLNPVPDVVQTMDMFGPQFVNYRYPEASFGGANLSVLPPHGLKQEQEENKGELSHSASSNLYLSSNQNPPHYMSATTVLQKTVQMGSTRVNDNAFCSTGRNRNGNHNNVVNNVVVEVQKLDDLVSVEGCTNLGGGGGGYLLNGDSNNSFVVVNGTKGLEHMVMPVDEETTAASIMGKQLHSISSHSKNQLGLTRDFLGVGDNNIKFNAMGSGSGMNLQRQCGGHYV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00038 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vium483g00038 529 FunFam protein indeterminate-domain 12-like 49 118 - -
Vium483g00038 529 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vium483g00038 529 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Vium483g00038 529 MobiDBLite consensus disorder prediction 1 43 - -
Vium483g00038 529 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vium483g00038 529 Gene3D Classic Zinc Finger 123 204 - -
Vium483g00038 529 MobiDBLite consensus disorder prediction 1 55 - -
Vium483g00038 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 510 IPR031140 -
Vium483g00038 529 SMART c2h2final6 70 92 IPR013087 -
Vium483g00038 529 SMART c2h2final6 112 142 IPR013087 -
Vium483g00038 529 SMART c2h2final6 147 167 IPR013087 -
Vium483g00038 529 Gene3D Classic Zinc Finger 49 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00038 Vium-Chr483 250459 252980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00038 40 217 IDZ Gene Family AT3G45260 84.270 1.48e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium483g00038 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00038 K25870 - gmx:100781896 708.753