Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00020 ATGGCTTCCTCCAACACTCCCAAATCCCATAAATCTCCCAAAGCCAAGAAAGGAGAAATCTCCACCACCCAAATTAAAGCGAAGGAGAAAATTCGAGACATCACCAAAGAGGAGAACCAAAAGAAGAAGAATAAGAAGCCCAAGCTCAGCAATGGCAATTCCAAACACCCACACGAAAAGGGCGCAGAAGGAAGCGGCGAAGATGGGAAAGCCAACGTGTTTCCCATGAATCGTATCAGGACCATGATCAAGGGCGAAGATCCTGATATGCGTGTTTCGCAGGAAGCGGTGTTAGCCATCAACAAAGCTGTGGAGAAGTTTCTTGAGCAATTCACGCAGGACGCTTATGCTTGTTGTGTCCAGGACCGCAAGAAATGTTTGAGTTACAAGCACGTTGCAAATGTTGTTAGTAAGAAGAGGAGATACGACTTTCTTTCCGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGAGAGATGCAGCAGGCAATGGAGTATTTCAGAAAATCTAA 522 0.4502 MASSNTPKSHKSPKAKKGEISTTQIKAKEKIRDITKEENQKKKNKKPKLSNGNSKHPHEKGAEGSGEDGKANVFPMNRIRTMIKGEDPDMRVSQEAVLAINKAVEKFLEQFTQDAYACCVQDRKKCLSYKHVANVVSKKRRYDFLSDFVPEKVKAEDALRERDAAGNGVFQKI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00020 173 Gene3D Histone, subunit A 14 151 IPR009072 GO:0046982
Vium483g00020 173 MobiDBLite consensus disorder prediction 12 45 - -
Vium483g00020 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 136 IPR003958 -
Vium483g00020 173 Coils Coil 25 45 - -
Vium483g00020 173 MobiDBLite consensus disorder prediction 1 75 - -
Vium483g00020 173 SUPERFAMILY Histone-fold 66 150 IPR009072 GO:0046982
Vium483g00020 173 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 40 167 - -
Vium483g00020 173 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00020 Vium-Chr483 122108 126422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00020 63 132 CCAAT-HAP5 Transcription Factor Family AT1G07980 42.857 5.48e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium483g00020 CBFD_NFYB_HMF 9.2e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00020 - K03506 gmx:100793738 206.453