Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00019 ATGGCTTCCTCCAACACTCCCAAATCCCATAAATCTCCCAAAGCCAAGAAAGGAGAAATCTCCACCACCCAAATTAAAGCGAAGGAGAAAATTCGAGACATCACCAAAGAGGAGAACCAAAAGAAGAAGAATAAGAAGCCCAAGCTCAGCAATGGCAATTCCAAACACCCACACGAAAAGGGCGCAGAAGGAAGCGGCGAAGATGGGAAAGCCAACGTGTTTCCCATGAATCGTATCAGGACCATGATCAAGGGCGAAGATCCTGATATGCGTGTTTCGCAGGAAGCGGTGTTAGCCATCAACAAAGCTGTGTTTCTTGAGCAATTCACGCAGGACGCTTATGCTTGTTGTGTCCAGGACCGCAAGAAATGTTTGAGTTACAAGCACGTTGCAAATGTTGTTAGTAAGAAGAGGAGATACGACTTTCTTTCCGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGAGAGATGCAGCAGGCAATGGAGTATTTCAGAAAATCTAA 516 0.4496 MASSNTPKSHKSPKAKKGEISTTQIKAKEKIRDITKEENQKKKNKKPKLSNGNSKHPHEKGAEGSGEDGKANVFPMNRIRTMIKGEDPDMRVSQEAVLAINKAVFLEQFTQDAYACCVQDRKKCLSYKHVANVVSKKRRYDFLSDFVPEKVKAEDALRERDAAGNGVFQKI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00019 171 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 40 165 - -
Vium483g00019 171 MobiDBLite consensus disorder prediction 1 74 - -
Vium483g00019 171 MobiDBLite consensus disorder prediction 12 45 - -
Vium483g00019 171 Gene3D Histone, subunit A 14 149 IPR009072 GO:0046982
Vium483g00019 171 Coils Coil 25 45 - -
Vium483g00019 171 SUPERFAMILY Histone-fold 74 148 IPR009072 GO:0046982
Vium483g00019 171 MobiDBLite consensus disorder prediction 52 66 - -
Vium483g00019 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 134 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00019 Vium-Chr483 122104 126422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00019 63 130 CCAAT-HAP5 Transcription Factor Family AT1G07980 41.429 7.60e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00019 - - gmx:100793738 197.593