Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00013 ATGTTCGAAAAGACTCTTTCTTTTGCCTGTGTGATGGGGTGCTGTAGTTGTTTTGGGTTCATCAGGACACCTAACCGTCAAAGACAAAGCTCTAAGCCTGCCATTAACAATAATCTCTACCAGGAGCCTCTGTTGGATGTTGATGACGACATTGAAGATGAAGAGGGCGACCATTTGTATAATGATGAGGTTAATAACACTAGTGGGGATGATGCCGAGGAAGAAACTCGGCCCAAGAAATCAGAAGAAATTTTGAACCTGAGAGTAGAGAATGGCATGGTTTGTAGGCAGTTTCCTGTTAAAGATACTCACAAAGTTGTTCGTATGGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGAAAAGTGGCTCTTTATCGTAGCTCTGTGGATGGAAAGCATTATGCAATCAAGGCCTTCCATAAATCTCATTTACTGAAACTTCGAGTTGCACCCTCAGAAACAGCCATGACTGACGTACTACGAGAGGTTCTCATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATCACTTCTATATGGTACTTGAATACGTAGAAGGCAAATGGGTCTGTGAGGGTACAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGACATACTTGCGTGATATTGTTTCTGGATTAACATATCTTCATGCTCATAACATAGTACATGGGGATATTAAACCGGATAATCTGTTGATTACTCGTCATGGTACTGTGAAGATAGGGGATTTCAGTGTCAGCCAGGCTGTTGAGGATAATAAGGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATATTAGGTCTGACCTATGGTGGTAAAGCTGCCGACACCTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCGTTTCTTGGAGACACACTTCAAGATACATACGACAAAATAGTAAATAATCCTTTGGTACTCCCCAATAATTTGAATCCGCCATTGAAGAACTTGATAGAAGGCTTACTTTCGAAAGATCCAAGACTAAGGATGACTTTGGGTGATGTTGCGGAAGATAGTTGGATTATCGGAGATGATGGGCCAATTCCCGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTAGGGATTGAAAACCATGATGAGAGCAAGACCAACTAA 1239 0.4221 MFEKTLSFACVMGCCSCFGFIRTPNRQRQSSKPAINNNLYQEPLLDVDDDIEDEEGDHLYNDEVNNTSGDDAEEETRPKKSEEILNLRVENGMVCRQFPVKDTHKVVRMEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGPACGLGEETARTYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAVEDNKDELRRSPGTPVFTAPECILGLTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNNLNPPLKNLIEGLLSKDPRLRMTLGDVAEDSWIIGDDGPIPEYLCWCKRKSLGIENHDESKTN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00013 412 FunFam Serine/threonine-protein kinase GRIK2 111 412 - -
Vium483g00013 412 Gene3D Phosphorylase Kinase; domain 1 115 217 - -
Vium483g00013 412 Pfam Protein kinase domain 123 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium483g00013 412 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Vium483g00013 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vium483g00013 412 CDD STKc_LKB1_CaMKK 127 382 - -
Vium483g00013 412 ProSiteProfiles Protein kinase domain profile. 121 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium483g00013 412 SMART serkin_6 121 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium483g00013 412 Gene3D Transferase(Phosphotransferase) domain 1 220 388 - -
Vium483g00013 412 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 73 384 - -
Vium483g00013 412 MobiDBLite consensus disorder prediction 59 80 - -
Vium483g00013 412 SUPERFAMILY Protein kinase-like (PK-like) 112 393 IPR011009 -
Vium483g00013 412 FunFam Serine/threonine-protein kinase Ssp1 115 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00013 Vium-Chr483 82323 87627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00013 127 389 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 5.41e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vium483g00013 Pkinase 3.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00013 K00908 - gmx:100789178 713.375