Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00009 ATGAGTACAGAGGAAAAGCCTGTGAATGACGAACATGAAGCAGGTTCTTGCAGACGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGGGATAACTGAAGAAGCTTCCCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTGGAAATACCATCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCGATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAGCACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGAAAAGGCAAATACCGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTCGGATTAAGAGAACGTCATCGTTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGACAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTCGAATAAAGGAAGGAGATGTATTGGTAGACACATCAACAAACGATGCTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCCGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGCGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTAAGGATCCAAAGTGTTCGAAATCGGAATATTGGTGCAAATAGGTCTCAGCTGGAAGATGCAAACGGATACAGAGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTAGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGAGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGGTTGGTTAGCTGATCTATGTGTCCTAACATTTTTGTTTTAA 1245 0.4297 MSTEEKPVNDEHEAGSCRRTVSLPVQKVDDPMGITEEASHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPAHNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVEKANTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRIKEGDVLVDTSTNDAENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNIGANRSQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMGWLADLCVLTFLF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00009 414 SUPERFAMILY RING/U-box 260 315 - -
Vium483g00009 414 MobiDBLite consensus disorder prediction 1 17 - -
Vium483g00009 414 MobiDBLite consensus disorder prediction 171 210 - -
Vium483g00009 414 PANTHER OS02G0165000 PROTEIN 24 401 - -
Vium483g00009 414 MobiDBLite consensus disorder prediction 53 71 - -
Vium483g00009 414 Pfam RING-variant domain 264 311 IPR011016 GO:0008270
Vium483g00009 414 MobiDBLite consensus disorder prediction 1 110 - -
Vium483g00009 414 SMART ringv_2 263 312 IPR011016 GO:0008270
Vium483g00009 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 319 IPR013083 -
Vium483g00009 414 MobiDBLite consensus disorder prediction 79 110 - -
Vium483g00009 414 MobiDBLite consensus disorder prediction 172 188 - -
Vium483g00009 414 CDD RING_CH-C4HC3_MARCH 264 312 - -
Vium483g00009 414 ProSiteProfiles Zinc finger RING-CH-type profile. 256 318 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00009 Vium-Chr483 24925 29448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00009 261 318 C3H Transcription Factor Family AT2G37950 49.153 3.79e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00009 - - gmx:100815566 702.975