Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium483g00008 ATGGGGATAACTGAAGAAGCTTCCCATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTGGAAATACCATCAAGAACAGAAGAGAGTTCTCAAGATTTTGTTGCGATCAAAATGCCACCAACACCAAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAGCACATAACTCTCCTGGGCCTTCAACATCAAGAGGAAAATCAGCCATAAGAAGCCTGCTCCCAAAACTGAGCTTCAGGTATCGAACACCAGCAGCAGATGTTGAAAAGGCAAATACCGCAGCTCCAGAAGTTTCCTCTTCAGGCATTGGAGAAAAGCCTTCAATTGCAAGATCATTGTCTCTTACTAAGATATTTACTCCTCGGATTAAGAGAACGTCATCGTTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCATGGTGGAAGTGTTGGTGGTCCTCTAAATAAAAAAGAAGCCCAGAGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAACAACAAAGACAAAAGCTTAAGGAGGATGGATTCATTTTTTCGCATTGTTCCTTCCACTCCTCGAATAAAGGAAGGAGATGTATTGGTAGACACATCAACAAACGATGCTGAAAATGAAGATGCTAATGGTGAAGATATAGCCGAAGAAGAGGCCGTGTGTAGAATCTGTCTGGTTGATCTGTGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCACTGGCTCACCAAGAATGCGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTACCTGTCACTCTATTAAGGATCCAAAGTGTTCGAAATCGGAATATTGGTGCAAATAGGTCTCAGCTGGAAGATGCAAACGGATACAGAGTATGGCAGGAAGTCCCAGTTCTTGTCATTGTCAGCATGCTAGCGTATTTCTGCTTTCTTGAGCAGCTATTGGTTGGAAAAATGAGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTTTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCTTCTGTCCAGTTTGCTATGGTGGTTCTCTTTGCGCATATTTTTTACTCCGTGGTTCGTGTGCAAGCTGTTTTGTCTATCCTTCTGGCCACATTTGCTGGTTTTGGTGTGGTGATGAGTGGCAGTTCTATTCTTGTGGAGTTTTATAGATGGAGAAGAAGATTGCAGGCATCAGAACACCGACAAGGCCCTCAATTGGTGCCACAAACAGGACAAAATCCACAATCTTCAAACACTCCTAATTCAGATTCAGGTTCAGGTCCTTCAAACCACAGTCAACCTGTGGTGCAAAATGAACAGAACTCAAATCAGAGTTGA 1455 0.4344 MGITEEASHVPPRKRQNLLLEIPSRTEESSQDFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPAHNSPGPSTSRGKSAIRSLLPKLSFRYRTPAADVEKANTAAPEVSSSGIGEKPSIARSLSLTKIFTPRIKRTSSLPLDEIRQSNNESSHGGSVGGPLNKKEAQRKIARSLSVPANNKDKSLRRMDSFFRIVPSTPRIKEGDVLVDTSTNDAENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVRNRNIGANRSQLEDANGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMSTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFAMVVLFAHIFYSVVRVQAVLSILLATFAGFGVVMSGSSILVEFYRWRRRLQASEHRQGPQLVPQTGQNPQSSNTPNSDSGSGPSNHSQPVVQNEQNSNQS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium483g00008 484 ProSiteProfiles Zinc finger RING-CH-type profile. 225 287 IPR011016 GO:0008270
Vium483g00008 484 PANTHER OS02G0165000 PROTEIN 12 440 - -
Vium483g00008 484 MobiDBLite consensus disorder prediction 1 79 - -
Vium483g00008 484 MobiDBLite consensus disorder prediction 439 484 - -
Vium483g00008 484 Pfam RING-variant domain 233 280 IPR011016 GO:0008270
Vium483g00008 484 MobiDBLite consensus disorder prediction 141 157 - -
Vium483g00008 484 SMART ringv_2 232 281 IPR011016 GO:0008270
Vium483g00008 484 MobiDBLite consensus disorder prediction 22 40 - -
Vium483g00008 484 CDD RING_CH-C4HC3_MARCH 233 281 - -
Vium483g00008 484 SUPERFAMILY RING/U-box 229 284 - -
Vium483g00008 484 MobiDBLite consensus disorder prediction 48 79 - -
Vium483g00008 484 MobiDBLite consensus disorder prediction 140 179 - -
Vium483g00008 484 MobiDBLite consensus disorder prediction 441 484 - -
Vium483g00008 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 288 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium483g00008 Vium-Chr483 23973 28746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium483g00008 230 287 C3H Transcription Factor Family AT2G37950 49.153 3.45e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium483g00008 - - gmx:100815566 836.639