Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4833g00001 ATGCTGGAAGGTGGTGTGAAATTCCCGGGAACAATAGACCTCAACAAGCAGAACGATGACTACTATGATTTCTCTAAGGGCTTTTACCATAAGCTTGAGGAGGGCACGGATATGTTAATTGACAGTATTGGGAGCTTGCAAACAAGTAACCATGGAGGATCTGTTGCAATGTCCATTGATAATAGCAGTGTTGGCTCCAATGATTCTCATACTCGTATATTGAACCACCAAGGGTTGCGGAGACGCCCCAATGATAATTCCTCCATTGCACACAGTGTCAATCATCGAGGAAGAGTTACACATGCTTTGAGTGATGATGCTTTGGCACATGCACTAATGGACACTAGTTCCCCAACTGAAGGGCTTGACAATTTTGATGAGTGGACAATTGATTTGAGGAATCTTAGTATGGGTGAGGCTTTTGCTCAAGGGGCTTTTGGAAAACTTTACAGAGGTACTTACAATAATGAAGATGTTGCTATTAAAATCTTGGAGAGTCCTGAAAATGATTCAACAAAGGCTCAGTTGATGGAACAACAGTTTCAGCAGGAGGTGATGATGCTGGCTACATTAAATCATCCTAACATAGTTCGTTTTATTGGTGCATGCCATAAGCCAATGGTATGGTGTATTGTTACAGAATATGCCAAAGGGGGTTCAGTTCGGCAATTTTTAATGAAGCGACAAAACAGATCAGTGCCCCTTAAATTGGCTGTTAAACAAGCTTTGGATGTTGCACGTGGGATGGCATATGTTCATGGCCTTGGATTGATCCACAGGGACTTGAAATCCGATAATCTTTTGATTTTTGGTGACAAATCAATTAAAATTGCTGATTTTGGAGTTGCTCGGATTGAGGTGCTAACGGAAGGAATGACACCTGAGACGGGAACATACCGTTGGATGGCTCCGTAA 915 0.4219 MLEGGVKFPGTIDLNKQNDDYYDFSKGFYHKLEEGTDMLIDSIGSLQTSNHGGSVAMSIDNSSVGSNDSHTRILNHQGLRRRPNDNSSIAHSVNHRGRVTHALSDDALAHALMDTSSPTEGLDNFDEWTIDLRNLSMGEAFAQGAFGKLYRGTYNNEDVAIKILESPENDSTKAQLMEQQFQQEVMMLATLNHPNIVRFIGACHKPMVWCIVTEYAKGGSVRQFLMKRQNRSVPLKLAVKQALDVARGMAYVHGLGLIHRDLKSDNLLIFGDKSIKIADFGVARIEVLTEGMTPETGTYRWMAP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4833g00001 304 Pfam Protein tyrosine and serine/threonine kinase 136 304 IPR001245 GO:0004672|GO:0006468
Vium4833g00001 304 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 304 - -
Vium4833g00001 304 ProSiteProfiles Protein kinase domain profile. 135 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4833g00001 304 FunFam Serine/threonine-protein kinase isoform 1 125 217 - -
Vium4833g00001 304 SUPERFAMILY Protein kinase-like (PK-like) 122 304 IPR011009 -
Vium4833g00001 304 Gene3D Transferase(Phosphotransferase) domain 1 211 304 - -
Vium4833g00001 304 Gene3D Phosphorylase Kinase; domain 1 126 210 - -
Vium4833g00001 304 SMART serkin_6 135 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4833g00001 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4833g00001 Vium-Chr4833 8416 10047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4833g00001 15 304 MAP Kinase Kinase Kinase AT4G31170 72.449 8.34e-148 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium4833g00001 PK_Tyr_Ser-Thr 3.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4833g00001 - - vum:124839343 607.06