Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4830g00003 ATGAAGAAACCGAAGCAAACTCAGTTGAATCCCAATTGGCTTCAACTACAACAAAAGCTGAATGACTCCAAGGCTTCAAGGACCTTCAAAAATTCAGACAAAGTTACCCCGGAATCAATATTGGGGAAACGTAAAGAGAGACCAGACGAGGAATCCAATGATAGTCAGATTAATCCTCTTACTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCTCTTGGAAGAGTAACTCTGGTCAATAAGTGGGGAAATGTTATTTATGACGAGTTTGTTCGGCCAATGGAACGGGTTGTTGACTTCCGTACTAAAATCAGTGGCATAAGGCCTCGAGATCTTAGAAAAGCAAAGGATTTTTGGACTGCTCAGAAGAAAGTGTCAGAGTTGATCAATGGAAGGATCCTTGTTGGTCATGCCTTGTCCAATGACTTTAAGGCATTGTTATTAAGTCATCCCAAAAAGGATATAAGAGACACCTCCGAGTATCAACCATTTCTAAGATCAAGTAGCAGAAGAGCACTGCGACATCTTGCTGACGAACATCTCGGTGTGCAGATCCAAACAGGAGAGCACTGCCCAATAGAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGACATAAGAAGGAGTGGGAAAAGAGCATAAAAGATCAATTTCGGTTGAAACAGAAGCAGAGGAAATCGAAGCAGAAAAAGAAGCACAAGATTGAAGAAGCTTCAAATGCAAACCATGTTGAAATTGAATCATAG 798 0.416 MKKPKQTQLNPNWLQLQQKLNDSKASRTFKNSDKVTPESILGKRKERPDEESNDSQINPLTPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFWTAQKKVSELINGRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLRSSSRRALRHLADEHLGVQIQTGEHCPIEDARAAMLLYQRHKKEWEKSIKDQFRLKQKQRKSKQKKKHKIEEASNANHVEIES 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4830g00003 265 MobiDBLite consensus disorder prediction 26 53 - -
Vium4830g00003 265 SMART exoiiiendus 71 229 IPR013520 -
Vium4830g00003 265 Coils Coil 238 258 - -
Vium4830g00003 265 CDD REX4_like 73 221 IPR037431 GO:0006364|GO:0008408
Vium4830g00003 265 Pfam Exonuclease 73 220 IPR013520 -
Vium4830g00003 265 MobiDBLite consensus disorder prediction 54 68 - -
Vium4830g00003 265 Gene3D - 67 249 IPR036397 GO:0003676
Vium4830g00003 265 MobiDBLite consensus disorder prediction 250 265 - -
Vium4830g00003 265 MobiDBLite consensus disorder prediction 1 68 - -
Vium4830g00003 265 SUPERFAMILY Ribonuclease H-like 72 228 IPR012337 -
Vium4830g00003 265 FunFam Interferon-stimulated exonuclease gene 20 68 239 - -
Vium4830g00003 265 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 34 247 IPR047021 GO:0004527
Vium4830g00003 265 MobiDBLite consensus disorder prediction 233 265 - -
Vium4830g00003 265 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4830g00003 Vium-Chr4830 29091 37845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4830g00003 72 226 C2H2 Transcription Factor Family AT5G40310 37.427 1.60e-28 109