Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4830g00001 ATGAAGAAACCGAAGCAAACTCAGTTGAATCCCAATTGGCTTCAACTACAACAAAAGCTGAATGACTCCAAGGCTTCAAGGACCTTCAAAAATTCAGACAAAGTTACCCCGGAATCAATATTGGGGAAACGTAAAGAGAGACCAGACGAGGAATCCAATGATAGTCAGATTAATCCTCTTACTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCTCTTGGAAGAGTAACTCTGGTCAATAAGTGGGGAAATGTTATTTATGACGAGTTTGTTCGGCCAATGGAACGGGTTGTTGACTTCCGTACTAAAATCAGTGGCATAAGGCCTCGAGATCTTAGAAAAGGTTTGATATTCTTTTGTTTATGTTAG 420 0.4071 MKKPKQTQLNPNWLQLQQKLNDSKASRTFKNSDKVTPESILGKRKERPDEESNDSQINPLTPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKGLIFFCLC 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4830g00001 139 SUPERFAMILY Ribonuclease H-like 63 135 IPR012337 -
Vium4830g00001 139 MobiDBLite consensus disorder prediction 1 68 - -
Vium4830g00001 139 MobiDBLite consensus disorder prediction 26 53 - -
Vium4830g00001 139 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 30 130 IPR047021 GO:0004527
Vium4830g00001 139 Gene3D - 67 135 IPR036397 GO:0003676
Vium4830g00001 139 MobiDBLite consensus disorder prediction 54 68 - -
Vium4830g00001 139 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4830g00001 Vium-Chr4830 21679 23885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4830g00001 50 133 C2H2 Transcription Factor Family AT2G48100 35.789 4.10e-10 54.7