Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium482g00002 TATGCTCCACTCTACCAATATTGTTCCAGTGAACAAACCACCGACAATACCTCTCTCCAACTTAATGTCAAAATCCTCCTTAATAACCTGTCTTCTTTGTCCTCTGGCCACACGCAATACCACACCAATTTCTCATGTGCAAACCCCTCAGACTCTATCTATGGCTTGTTCATGTGTAGGGGTGACTCTTCACCTCATGACTGTCAAAAATGCGTTCAAGGTGCAAAAAACAAACTATCCTCAGATTGTTCTCTGTCCAAAGAATCTGTCACTTGGTACGAAGACTGCATGGTTCGCTATTCCACCAACTACTTCTTCTCCACCGTCGCCACAACCCAATGCAACACTGGCAAGGTGTTCTCAAACCCTGAAAGCTTCATGCAATTATATTTTCTGACCATGAACCAAACAGCGGATGCAGCAGCACGTGCTCCTATGGTTAACAACAATACCAAGATGTTTTCTACGAGGGAAGCACGCGTGTCTGATTCCCACAACCAGACCCTTTATTGTATGGCTCAATGCTCACCTGATCTATCACCTAATGATTGCAGAACCTGCCTCGGTGAAGCCATAAGGAATGTTCCAAACTCTCCACAATGTTCTGGGGTGAGACTTGGAGGGAAAGTTCTTTATCCCAGTTGTAACATTAGGTATGAATCTTATCCTTTTTATCTCGTTCCACCGACAAACCTTTCACCTGAGCTTGTTCCCGAAACAAAAACCTCTCATCATGCAGATTTAACGTTTTCAAAAGACCCTCTTTATCTCTCTCACAATTGCTCGAGTAACAAAACCCTCGCTTCCAATAACACTTCACAAATAAGCCTCATCACCCTCTTTTCTTACCTATCTTCCAACGCCACCAAAAGGAAATATTACGAAGCTGATGTGAACAGCACAGTTTATGGCCTCTTCATGTGCCGAGGTGACGTTCCCTATGACGTGTGTGAAAAATGCGTCCAAAACGCAACACATCGAATAGCATTAGAATGCAACTCCCTCCAAGAGGGTATAGTTTGGTTCAGCCAATGCATGGTTCGCTATTCCGACAGAAAATTTTTTAGAACAGTAAAGACAAGTCCTATGTTTTCGGAGCTGAATTTCACTCAAGGAAACGAGAAACAAAGTTCCTTCAGTGTTACATTAGCGAAGACGCTAGATAAGGTGGCAGTTATGGCAGGAGACAGTGATGAAAGATTTGGAAAATACTCAATGAAACTGAATGATCAACAAATCCTTTACACTCTTGCACAATGCACGCATGATTTGCCTACTGACGATTGCAAGGGTTGCTTGGGAATTTTGATAGGAACAGAAATTCCATGGCCTTTTTTGGAAAGCACAGCGGGAAGAGTTCTATATCCTAGTTGCAATATCAGATTTGAATTTTCACAGTTTTACTTCGACAAAGTTCCATCTGCAAGACCAGTTAATCTCGAATCAGGAAATAAAAGAATCAATGTACGAAGAATTATATTGATTACTGTGCCCACAATTATTTTGATGACGCTCTTCTTCGTGGCTTTTTATTTTCAAAGGAGAAATACAAGAAAGAGCCATGCGACCATTCTCAAGGAAAATTTTGGTCATGAAACTGCCACTTTGGAGCCCTTACACTTCAATTTGACAGCAATTGAGTTAGCAACTAATAACTTTTCCAACGAAAACAAGATAGGTAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTCCTAATGGACGTCGAATTGCGGTAAAAAGACTCTCAAAAAGTTCTAAACAAGGTGTTGCTGAGTTCAAGACCGAAGTATTATTAATTGCCAAACTTCAACATAGAAATTTAGTAGAATTCATTGGTTTTTGTCTTGAAGAAGAAGAAAAGATACTTATTTACGAATATGTGCCCAACAAGAGTCTTGATCACTTTTTATTTGATCCTCAACCACATAGATCATTAAGTTGGTATGAAAGATATAAAATTATTGGAGGTATTGCACGAGGAATTGTTTATTTACATGAACACTCTCGACTTAAGATCATACATCGTGATCTTAAACCGAGTAATGTTCTACTTGATGAAAATATGACTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTATTGAAATAAGTCAAGACCAAGAAAGCACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTACGGGAAGAAAAAATATATATCCTCCTGAACCACATCATATAGCTGACGGCCTCCTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAGAACCTTAAACTCAAATATTAGAGAAAACTATGCAGAAATTGAAGTTATAAAGTGTATTCAGATTGGTCTATTATGTGTTCAAGAAAGTCCTGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGTGAATTGCCAACTCCACAAAGACCAGCATTTTTCTTGCACGAAAGAATGGATTCCAAATCTATTGGGAGGAAATCTAGTTCTAGAAGATTTATGAATATTTCTAAGCCATTATCAATCAATGAAATGTCTACAAGTGAATGTTTTCCTCGTTAA 2643 0.3833 YAPLYQYCSSEQTTDNTSLQLNVKILLNNLSSLSSGHTQYHTNFSCANPSDSIYGLFMCRGDSSPHDCQKCVQGAKNKLSSDCSLSKESVTWYEDCMVRYSTNYFFSTVATTQCNTGKVFSNPESFMQLYFLTMNQTADAAARAPMVNNNTKMFSTREARVSDSHNQTLYCMAQCSPDLSPNDCRTCLGEAIRNVPNSPQCSGVRLGGKVLYPSCNIRYESYPFYLVPPTNLSPELVPETKTSHHADLTFSKDPLYLSHNCSSNKTLASNNTSQISLITLFSYLSSNATKRKYYEADVNSTVYGLFMCRGDVPYDVCEKCVQNATHRIALECNSLQEGIVWFSQCMVRYSDRKFFRTVKTSPMFSELNFTQGNEKQSSFSVTLAKTLDKVAVMAGDSDERFGKYSMKLNDQQILYTLAQCTHDLPTDDCKGCLGILIGTEIPWPFLESTAGRVLYPSCNIRFEFSQFYFDKVPSARPVNLESGNKRINVRRIILITVPTIILMTLFFVAFYFQRRNTRKSHATILKENFGHETATLEPLHFNLTAIELATNNFSNENKIGKGGFGEVYKGILPNGRRIAVKRLSKSSKQGVAEFKTEVLLIAKLQHRNLVEFIGFCLEEEEKILIYEYVPNKSLDHFLFDPQPHRSLSWYERYKIIGGIARGIVYLHEHSRLKIIHRDLKPSNVLLDENMTPKISDFGIAKIIEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNIYPPEPHHIADGLLSYVWKQWRAQTPLRTLNSNIRENYAEIEVIKCIQIGLLCVQESPDVRPTMVTIVSYLDGHFSELPTPQRPAFFLHERMDSKSIGRKSSSRRFMNISKPLSINEMSTSECFPR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium482g00002 880 ProSitePatterns Protein kinases ATP-binding region signature. 559 581 IPR017441 GO:0005524
Vium482g00002 880 FunFam Cysteine-rich receptor-like protein kinase 25 362 467 - -
Vium482g00002 880 ProSiteProfiles Protein kinase domain profile. 553 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium482g00002 880 CDD STKc_IRAK 559 827 - -
Vium482g00002 880 SUPERFAMILY Protein kinase-like (PK-like) 537 847 IPR011009 -
Vium482g00002 880 Gene3D Phosphorylase Kinase; domain 1 513 628 - -
Vium482g00002 880 SMART serkin_6 553 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium482g00002 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 674 686 IPR008271 GO:0004672|GO:0006468
Vium482g00002 880 FunFam cysteine-rich receptor-like protein kinase 10 629 832 - -
Vium482g00002 880 ProSiteProfiles Gnk2-homologous domain profile. 1 105 IPR002902 -
Vium482g00002 880 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 513 628 - -
Vium482g00002 880 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 248 875 - -
Vium482g00002 880 ProSiteProfiles Gnk2-homologous domain profile. 255 354 IPR002902 -
Vium482g00002 880 Pfam Salt stress response/antifungal 373 463 IPR002902 -
Vium482g00002 880 Pfam Salt stress response/antifungal 261 351 IPR002902 -
Vium482g00002 880 Pfam Salt stress response/antifungal 8 102 IPR002902 -
Vium482g00002 880 Pfam Salt stress response/antifungal 114 222 IPR002902 -
Vium482g00002 880 Pfam Protein tyrosine and serine/threonine kinase 555 825 IPR001245 GO:0004672|GO:0006468
Vium482g00002 880 Gene3D - 107 224 IPR038408 -
Vium482g00002 880 Gene3D - 360 467 IPR038408 -
Vium482g00002 880 Gene3D - 2 105 IPR038408 -
Vium482g00002 880 Gene3D - 254 354 IPR038408 -
Vium482g00002 880 Gene3D Transferase(Phosphotransferase) domain 1 629 833 - -
Vium482g00002 880 ProSiteProfiles Gnk2-homologous domain profile. 107 224 IPR002902 -
Vium482g00002 880 ProSiteProfiles Gnk2-homologous domain profile. 360 467 IPR002902 -
Vium482g00002 880 FunFam Cysteine-rich receptor-like protein kinase 25 109 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium482g00002 Vium-Chr482 3192 6624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium482g00002 249 880 Receptor kinase-like Gene Family AT4G05200 42.640 1.63e-166 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium482g00002 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium482g00002 - - gmx:100807113 1052.74