Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium482g00001 GGTATTCTTCCTAATGGACGTCGAATTGCGGTAAAAAGACTCTCAAAAAGTTCTAAACAAGGTGTTGCTGAGTTCAAGACCGAAGTATTATTAATTGCCAAACTTCAACATAGAAATTTAGTAGAATTCATTGGTTTTTGTCTTGAAGAAGAAGAAAAGATACTTATTTACGAATATGTGCCCAACAAGAGTCTTGATCACTTTTTATTTGATCCTCAACCACATAGATCATTAAGTTGGTTTGAAAGATATAAAATTATTGGAGGTATTGCACGAGGAATTGTTTATTTACATGAACACTCTCGACTTAAGATCATACATCGTGATCTTAAACCGAGTAATGTTCTACTTGATGAAAATATGACTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTATTGAAATAAGTCAAGACCAAGAAAGCACAGATTTAATTGTTGGAACATGTGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTACGGGAAGAAAAAATATATATCCTCCTGAACCACATCATATAGCTGACGGCCTCCTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAGAACCTTTAACTCAAATATTAGAGAAAACTATGCAGAAATTGAAGTTATAAAGTGTATTCAGATTGGTCTATTATGTGTTCAAGAAAGTCCTGATGTTAGACCAACAATGGTAACAATTGTTTCATATCTTGATGGTCATTTTAGTGAATTGCCAACTCCACAAAGACCAGCATTTTTCTTGCACGAAAGAATGGATTCCAAATCTATTGGGAGGAAATCTAGTTCTAGAAGATTTATGAATATTTCTAAGCCATTATCAATCAATGAAATGTCTACAAGTGAATGTTTTCCTCGTTAA 936 0.3269 GILPNGRRIAVKRLSKSSKQGVAEFKTEVLLIAKLQHRNLVEFIGFCLEEEEKILIYEYVPNKSLDHFLFDPQPHRSLSWFERYKIIGGIARGIVYLHEHSRLKIIHRDLKPSNVLLDENMTPKISDFGIAKIIEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNIYPPEPHHIADGLLSYVWKQWRAQTPLRTFNSNIRENYAEIEVIKCIQIGLLCVQESPDVRPTMVTIVSYLDGHFSELPTPQRPAFFLHERMDSKSIGRKSSSRRFMNISKPLSINEMSTSECFPR 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium482g00001 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 105 117 IPR008271 GO:0004672|GO:0006468
Vium482g00001 311 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium482g00001 311 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 306 - -
Vium482g00001 311 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium482g00001 311 CDD STKc_IRAK 1 258 - -
Vium482g00001 311 FunFam cysteine-rich receptor-like protein kinase 10 60 263 - -
Vium482g00001 311 Pfam Protein tyrosine and serine/threonine kinase 7 256 IPR001245 GO:0004672|GO:0006468
Vium482g00001 311 FunFam Uncharacterized protein 1 59 - -
Vium482g00001 311 Gene3D Phosphorylase Kinase; domain 1 1 59 - -
Vium482g00001 311 Gene3D Transferase(Phosphotransferase) domain 1 60 265 - -
Vium482g00001 311 SUPERFAMILY Protein kinase-like (PK-like) 4 278 IPR011009 -
Vium482g00001 311 PIRSF ILK 4 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium482g00001 Vium-Chr482 63 1319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium482g00001 1 311 Receptor kinase-like Gene Family AT4G23140 52.038 3.87e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium482g00001 PK_Tyr_Ser-Thr 4.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium482g00001 - - gmx:100807113 442.58