Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4823g00002 ATGGGTCGTCCAAAATTGATTTTGAAACCCATCACAAATGGGAGAGATCGTGATTTGGCTTTGATGAAGAGAAAGAAGGCATTATTGAAGACAATGTCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGTTTGATTATGTATGATGGCAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATTCAAAGGTATGAGCGTATGGTGTATGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGACGAGGAAGAACATGGTTGACAGTGAGATTGCCAAAGTTCAGAAAGAGATCCTTGAGACCAAATATCCCACTTGGCATCCATGCTTCAACAACCTTGGTGCTGAAGAATTGAAGAATTTCATAGCTAGATTGGACAGTAAGCTTGAAGCATGTAATCAACGAACAGTAATGTTCAAATGCAAGAAACAAGATGAAGCCCAATTCAATTTCAAGCAATGCCTGATTCAACCAGAATGTGTTGCTCCAAATCCAACCCAACTGGTTGTCATGAAGGATATTCTCCAAAACCAACTTCCTTTTGCTCCAATGAACCCACTTAATGGTAACCTTGCACCATCTTTCCAACACAATTCTGAAAAAGGCTCTAGTTCTCAATCCCAAAAGCTTAACTTTGATCCAAATCTCATGCAATTGAAGGAAGAGAACAAAGGAGTGGTGGATACATCCAATGCATGCCAAACTGATGTGCTTAAAAATCCTTCAAATAAATTTGATGTGCCTTATGATTTTCTTGATGAGTCCTTTAATCTTTTTGACCAACTTGGTGAAATACAAAGCTTGAATCAACATTGGGGGAATAATCAACAGGATGCACTTGTGGTTGGAGGAAGTATCACAACAATGAATGGTGGTGTTACCGATGATACAAATTTTCATGGAAATCAATACAATACAGAGACCTCTCTTTGCAATTACAATGGAGTTATGCAATCCTATAACTATGACGCATCATGGCAGGATATTGGTTTTCAGCAACAGAATCTGCAGCAAATGGTAACTTTACCTTCATTTCAACCATCAGTAGATAAATTCAAGCAGATCACCACAACAGAGAGCTTAAAAATCTGTTATCCTAACATATGA 1140 0.3833 MGRPKLILKPITNGRDRDLALMKRKKALLKTMSEFCSVCGVKACLIMYDGKGDSPPLTWPQDPIEMHSIIQRYERMVYEKIPKNFDLNNFFETRKNMVDSEIAKVQKEILETKYPTWHPCFNNLGAEELKNFIARLDSKLEACNQRTVMFKCKKQDEAQFNFKQCLIQPECVAPNPTQLVVMKDILQNQLPFAPMNPLNGNLAPSFQHNSEKGSSSQSQKLNFDPNLMQLKEENKGVVDTSNACQTDVLKNPSNKFDVPYDFLDESFNLFDQLGEIQSLNQHWGNNQQDALVVGGSITTMNGGVTDDTNFHGNQYNTETSLCNYNGVMQSYNYDASWQDIGFQQQNLQQMVTLPSFQPSVDKFKQITTTESLKICYPNI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4823g00002 379 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium4823g00002 379 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Vium4823g00002 379 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vium4823g00002 379 MobiDBLite consensus disorder prediction 201 221 - -
Vium4823g00002 379 Coils Coil 126 146 - -
Vium4823g00002 379 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vium4823g00002 379 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4823g00002 Vium-Chr4823 15845 17320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4823g00002 1 196 Type I MADS-box Gene Family AT5G55690 27.536 6.68e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium4823g00002 SRF-TF 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4823g00002 - - vra:106760100 741.11