Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4823g00001 ATGGAGATCACGAGCAGTATGATGTGGTTTTTCAAAGATAAAGGGTTTGATGACAACAGTGTGCAAGGAATTTTCCGACGGTGTAGGCGCCTTGAGGATGTGCATCAGGAAAGAGCCAGTGAGAATTGGGAGTATTTGAGAAGCATTGGCATTGAAGAAAGAAAGTTGCCCTCAATTGTTTCAAAATGCCCCAAAATTCTTGCGCTGGATCTTTATGACAAGATTATGCCCACGGTTGAATGTCTCAGGACCCTGGGAACAAAACCACGTGAGGTTGCTACTGCCATAGCCAAGTTCCCTCACATACTCTCAAACAGTGTGGAAGAGAAGCTTTGTCCCCTTTTGGCCTTCTTTCAGGCTTTGGGTATTCCTGAAAAGCATATTGGCAAAATGATACTGCTCAATCCTAGGCTTATAAGTTACAGCATTGAAACAAAGTTGACTGAAATTGTGAACTTTCTTGCTAGCCTTGGTCTCAATAAAGATGGAATGATTGGAAAAGTTATAGTCAAGGACCCCTATATTATGGGTTATAGTGTTGAGAAAAGACTCCGCCCTACTTCACAGTTCCTCAAATCAATAGGTCTGAGTGAGCAGGATCTTCAAGCAGTGGCTGTGAAGTTCCCAGCAATCTTGAGTAGAGATGTGAACAAGCTTTTGGTACCCAATTATGCGTATCTAAAGAGACGAGGATTTCAAGAAAGACAGGTAGTTGCTTTGGTGGTTGGTTTTCCTCCTATATTGATCAAGAGCATTCAGAATTCATTAGAACCAAGGTTCAAATTTTTAGTGGATGTGATGGGAAGACAAGTTGATGAAGTTGTTGATTATCCTTGTTTCTTTCACCATGGCCTCAAGAGAAGAATAGAACCGCGGTACAAACTTCTAAAGGAGAAGAATTTAAATTGTAGCTTGAGTGAAATGTTGGATTGCAACAAGAAGAAGTTCTTCATGAAGTTTGGTTTGTTAGAAGGACAAGCCTTGAGTAACTAG 993 0.4099 MEITSSMMWFFKDKGFDDNSVQGIFRRCRRLEDVHQERASENWEYLRSIGIEERKLPSIVSKCPKILALDLYDKIMPTVECLRTLGTKPREVATAIAKFPHILSNSVEEKLCPLLAFFQALGIPEKHIGKMILLNPRLISYSIETKLTEIVNFLASLGLNKDGMIGKVIVKDPYIMGYSVEKRLRPTSQFLKSIGLSEQDLQAVAVKFPAILSRDVNKLLVPNYAYLKRRGFQERQVVALVVGFPPILIKSIQNSLEPRFKFLVDVMGRQVDEVVDYPCFFHHGLKRRIEPRYKLLKEKNLNCSLSEMLDCNKKKFFMKFGLLEGQALSN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4823g00001 330 SMART mt_12 238 270 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 166 197 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 57 88 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 202 233 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 SMART mt_12 22 52 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 Gene3D Transcription termination factor 3, mitochondrial 91 324 IPR038538 -
Vium4823g00001 330 PANTHER CGI-12 PROTEIN-RELATED 127 247 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 92 324 - -
Vium4823g00001 330 Pfam mTERF 10 118 IPR003690 GO:0003690|GO:0006355
Vium4823g00001 330 Pfam mTERF 106 316 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium4823g00001 mTERF 1.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4823g00001 K15031 - gmx:100816929 605.52