Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4821g00002 ATGGCTACCCATATTTGTCTCTCTCTTTGCTTCTTCTACATCACAACCCTCCACCTTGTTTCAACGTTGGCTCAGTCTGACAATTATATCATTCACATGGATATATCAGCCATGCCCAAAGCATTCTCCACCCAGCACACTTGGTATCAATCCACTCTTTCTTCAGCGTTGAAAAGTTCCAAACCCACCAGTAATAATCTTAAATCTATTATTTCTACCAAGCTGCTTTACACCTACACCAATGTCATCAATGGTTTCAGTGCAAACCTTTCACCTAAAGAGCTTGAAGCTCTGAAAACCTCCCCCGGTTATGTTTCTTTCTTGCGAGATTTACCAGCCAAGCGTGACACAACACACTCACCGTCCTTCCTTGGCTTAAACCCCAATGAAGGGGCGTGGCCAGCGGCACAGTTTGGCAAGGATGTCATAGTTGGTTTGGTGGACACTGGAATTTGGCCAGAAAGTGAAAGCTTCAGAGACGATGGAATGGGTGGGGTTCCTTCACGATGGAAAGGGCAATGTGAAAGTACCATCAAATGCAACAAGAAGCTCATTGGAGCAAGGTTCTTTAACAAAGGGTTGTTGGCAAAGAACCCCAACATCACCATAGGTGCGAACTCAACACGTGACACTGAGGGTCATGGAACTCATACATCAAGCACTGCAGCTGGGAGCGTAGTCGAAGGTGCATCGTACTTTGGGTATGCTTCTGGAACAGCCACGGGAATGGCTTCACGTGCGAGAGTGGCCATGTACAAAGCCCTGTGGGAAGATGGAGCTTACATGTCTGATATAATAGCCGCAATTGATAGTGCGATATCTGATGGGGTAGATGTTCTTTCTTTGTCATTTGGCTTTGATGATATACCTTTGTACGAGGACCCTGTTGCTATAGCCACGTTTGCAGCAATGCAGAAAAACATTTTTGTGTCGACGTCAGCAGGGAACGAAGGGCCTTCCCTTGGAAGACTTCACAACGGAATACCATGGGTCATAACTGTGGCTGCCGGAACATTGGACCGTGAATTTCACGGGGCTCTTACTCTTGGCAATGGAGTCCAACTAACTGGCATGTCTCTCTATCATGGAAACTTCTCCTCTAGCCATGTTCCAATTGTTTTCATGGGGTTGTGCGACAGAGTGAAGGAACTGGCCAAAGTGAGGACCAAGATTGTGGTGTGTGAAGACAATGGAACAATCATTGATCTTCAAGTGTCTAACATTTTTGAAGCAAATGTTGTCGCGGCAGTGTTCATAACAAACAGTTCCGATAGTTCGTTTTTCTTAGATAATAGCTTTGCAACAATTGTTATTTCCACAGCAGATGGGGAAATTGTCAAAGCTTACATCAAGAGCAATAACTCTAGTGCGAAAGCAGGCATGTCTTTTGAGATGACAGTTTTGGGTACTAAACCAGCACCGAGTGTGGATAGTTACAGTTCCCGAGGACCTTCAAGTAGTTGTCCATTTGTGTTGAAACCGGACATCACTGCTCCTGGTACATCAATCTTAGCTGCATGGCCTCAAAATCTTCCGGTGGAAGTGTTTGGGTCGCAAAGTATTTTCAGTAACTTCAATTTGTTAAGTGGCACATCCATGGCATGCCCTCATGTTGCTGGTGTCGCAGCATTGTTAAGAGGAGCACACCCCGAATGGAGTGTTGCATCCATTAGGTCAGCCATCATGACAACATCAGACATGGTTGATAACACCTTAGGGCCCATCAAAGACATTGGCAACGACAACAAACGAGCCTCTCCTTTAGCATCTGGTTCTGGTCACATCAACCCTAATAAAGCCCTTAACCCTGGCCTTGTTTACGATGCTGGAGTTCAAGATTATGTTAATCTGCTCTGCGCTCTTGGCTTCACCCAAAGAAACATCACCGTCATCACAAGAACCTCTTCCAATGATTGTTCCAAAGCTTCCTTGGACCTCAACTACCCTTCTTTTATTGCTTTCTTCAACAGCAACAATTCAAGTACAGCACAAGAATTTCAGAGAACAGTGACCCATGTAGGGGAGGGACCTGCAAGCTATGCTGCCAGCTTTATACCCGTGGAAGGGTACGAAGTCAGTGTGATCCCTGAATTGTTAGTGTTCAAGGAGAAGTACGAGAAGTTGAACTACACGTTGAGAATTGAAGGTCCACGAAAGAAGAAAGAGAAAAAAGTTGCTTTTGGGTATCTCATTTGGACGGACATCCAACATGTGGTTAGGAGTCCCATTGTGGTCACCACTCTCAAATTCGACTTCTAA 2259 0.4524 MATHICLSLCFFYITTLHLVSTLAQSDNYIIHMDISAMPKAFSTQHTWYQSTLSSALKSSKPTSNNLKSIISTKLLYTYTNVINGFSANLSPKELEALKTSPGYVSFLRDLPAKRDTTHSPSFLGLNPNEGAWPAAQFGKDVIVGLVDTGIWPESESFRDDGMGGVPSRWKGQCESTIKCNKKLIGARFFNKGLLAKNPNITIGANSTRDTEGHGTHTSSTAAGSVVEGASYFGYASGTATGMASRARVAMYKALWEDGAYMSDIIAAIDSAISDGVDVLSLSFGFDDIPLYEDPVAIATFAAMQKNIFVSTSAGNEGPSLGRLHNGIPWVITVAAGTLDREFHGALTLGNGVQLTGMSLYHGNFSSSHVPIVFMGLCDRVKELAKVRTKIVVCEDNGTIIDLQVSNIFEANVVAAVFITNSSDSSFFLDNSFATIVISTADGEIVKAYIKSNNSSAKAGMSFEMTVLGTKPAPSVDSYSSRGPSSSCPFVLKPDITAPGTSILAAWPQNLPVEVFGSQSIFSNFNLLSGTSMACPHVAGVAALLRGAHPEWSVASIRSAIMTTSDMVDNTLGPIKDIGNDNKRASPLASGSGHINPNKALNPGLVYDAGVQDYVNLLCALGFTQRNITVITRTSSNDCSKASLDLNYPSFIAFFNSNNSSTAQEFQRTVTHVGEGPASYAASFIPVEGYEVSVIPELLVFKEKYEKLNYTLRIEGPRKKKEKKVAFGYLIWTDIQHVVRSPIVVTTLKFDF 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4821g00002 752 Pfam Peptidase inhibitor I9 29 112 IPR010259 -
Vium4821g00002 752 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 114 IPR037045 -
Vium4821g00002 752 FunFam Subtilisin-like protease SBT1.5 141 348 - -
Vium4821g00002 752 Gene3D - 340 468 - -
Vium4821g00002 752 CDD PA_subtilisin_like 347 457 - -
Vium4821g00002 752 Gene3D - 618 748 - -
Vium4821g00002 752 SUPERFAMILY Subtilisin-like 116 605 IPR036852 GO:0004252|GO:0006508
Vium4821g00002 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 745 IPR045051 -
Vium4821g00002 752 CDD Peptidases_S8_3 116 566 IPR034197 -
Vium4821g00002 752 ProSiteProfiles Serine proteases, subtilase domain profile. 120 601 - -
Vium4821g00002 752 FunFam Subtilisin-like protease SBT1.9 18 115 - -
Vium4821g00002 752 Gene3D Peptidase S8/S53 domain 141 614 IPR036852 GO:0004252|GO:0006508
Vium4821g00002 752 PRINTS Subtilisin serine protease family (S8) signature 210 223 IPR015500 -
Vium4821g00002 752 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Vium4821g00002 752 PRINTS Subtilisin serine protease family (S8) signature 529 545 IPR015500 -
Vium4821g00002 752 ProSitePatterns Serine proteases, subtilase family, serine active site. 530 540 IPR023828 -
Vium4821g00002 752 Pfam Fibronectin type-III domain 645 745 IPR041469 -
Vium4821g00002 752 Pfam Subtilase family 139 570 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4821g00002 Vium-Chr4821 17743 20138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4821g00002 1 734 Subtilisin-like Serine Gene Family AT5G67090 46.481 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4821g00002 - - gmx:100783026 1202.19